An introduction to MPEG-G, the new ISO standard for genomic information representation

Alberti, C.; Paridaens, T.; Voges, J.; Naro, D.; Ahmad, J. J.; Ravasi, M.; Renzi, D.; Zoia, G.; Ochoa, I.; Mattavelli, M.; Delgado, J.; Hernaez, M.

doi:10.1101/426353

bioRxiv · 10.1101/426353

An introduction to MPEG-G, the new ISO standard for genomic information representation

Alberti, C.·Paridaens, T.·Voges, J.·Naro, D.·Ahmad, J. J.·Ravasi, M.·Renzi, D.·Zoia, G.·Ochoa, I.·Mattavelli, M.·Delgado, J.·Hernaez, M.

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Abstract

The MPEG-G standardization initiative is a coordinated international effort to specify a compressed data format that enables large scale genomic data to be processed, transported and shared. The standard consists of a set of specifications (i.e., a book) describing: i) a nor-mative format syntax, and ii) a normative decoding process to retrieve the information coded in a compliant file or bitstream. Such decoding process enables the use of leading-edge com-pression technologies that have exhibited significant compression gains over currently used formats for storage of unaligned and aligned sequencing reads. Additionally, the standard provides a wealth of much needed functionality, such as selective access, data aggregation, ap-plication programming interfaces to the compressed data, standard interfaces to support data protection mechanisms, support for streaming and a procedure to assess the conformance of implementations. ISO/IEC is engaged in supporting the maintenance and availability of the standard specification, which guarantees the perenniality of applications using MPEG-G. Fi-nally, the standard ensures interoperability and integration with existing genomic information processing pipelines by providing support for conversion from the FASTQ/SAM/BAM file formats.\n\nIn this paper we provide an overview of the MPEG-G specification, with particular focus on the main advantages and novel functionality it offers. As the standard only specifies the decoding process, encoding performance, both in terms of speed and compression ratio, can vary depending on specific encoder implementations, and will likely improve during the lifetime of MPEG-G. Hence, the performance statistics provided here are only indicative baseline examples of the technologies included in the standard.

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Alberti, C., Paridaens, T., Voges, J., Naro, D., Ahmad, J. J., Ravasi, M., Renzi, D., Zoia, G., Ochoa, I., Mattavelli, M., Delgado, J., Hernaez, M.. 2018-09-27. An introduction to MPEG-G, the new ISO standard for genomic information representation. https://doi.org/10.1101/426353

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