Identification of a Distinct Metabolomic Subtype of Sporadic ALS Patients

Gross, S.; Chen, Q.; Sandhu, D.; Konrad, C.; Roychoudhury, D.; Schwartz, B. I.; Cheng, R. R.; Bredvik, K.; Kawamata, H.; Calder, E. L.; Studer, L.; Fischer, S. M.; Manfredi, G.

doi:10.1101/416396

bioRxiv · 10.1101/416396

Identification of a Distinct Metabolomic Subtype of Sporadic ALS Patients

Gross, S.·Chen, Q.·Sandhu, D.·Konrad, C.·Roychoudhury, D.·Schwartz, B. I.·Cheng, R. R.·Bredvik, K.·Kawamata, H.·Calder, E. L.·Studer, L.·Fischer, S. M.·Manfredi, G.

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Abstract

Sporadic amyotrophic lateral sclerosis (sALS) is a progressive motor neuron disease resulting in paralysis and death. Genes responsible for familial ALS have been identified, however the molecular basis for sALS is unknown. To discover metabotypic biomarkers that inform on disease etiology, untargeted metabolite profiling was performed on 77 patient-derived dermal fibroblast lines and 45 age/sex-matched controls. Surprisingly, 25% of sALS lines showed upregulated methionine-derived homocysteine, channeled to cysteine and glutathione (GSH). Stable isotope tracing of [U-13C]-glucose showed activation of the trans-sulfuration pathway, associated with accelerated glucose flux into the TCA cycle, glutamate, GSH, alanine, aspartate, acylcarnitines and nucleotide phosphates. A four-molecule support vector machine model distinguished the sALS subtype from controls with 97.5% accuracy. Plasma metabolite profiling identified increased taurine as a hallmark metabolite for this sALS subset, suggesting systemic perturbation of cysteine metabolism. Furthermore, integrated multiomics (mRNAs/microRNAs/metabolites) identified the super-trans-sulfuration pathway as a top hit for the sALS subtype. We conclude that sALS can be stratified into distinct metabotypes, providing for future development of personalized therapies that offer new hope to sufferers.

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Gross, S., Chen, Q., Sandhu, D., Konrad, C., Roychoudhury, D., Schwartz, B. I., Cheng, R. R., Bredvik, K., Kawamata, H., Calder, E. L., Studer, L., Fischer, S. M., Manfredi, G.. 2018-09-13. Identification of a Distinct Metabolomic Subtype of Sporadic ALS Patients. https://doi.org/10.1101/416396

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