bioRxiv Science⌕ Search

bioRxiv · 10.1101/402065

Description of novel marine bioflocculant-producing bacteria isolated from biofloc of pacific whiteleg shrimp, Litopenaeus vannamei culture ponds

Abstract

Description of marine bioflocculant-producing bacteria isolated from biofloc of Pacific whiteleg shrimp, Litopenaeus vannamei culture ponds was prompted to explore the bacteria that enhanced bioflocculation process in aquaculture wastewater treatment. Certain marine bacteria were potentially secreted extracellular polymeric substances (EPS) which response to the physiological stress encountered in the natural environment that can act as bioflocculants. This study aimed to identify marine bioflocculant-producing bacteria isolated from biofloc; to evaluate their flocculating activities; and to characterize their protein in EPS. Phenotypic and genotypic identification of the bacteria including morphological and molecular approaches were employed, while their flocculating activities were examined via Kaolin clay suspension method and statistically analyzed. The EPS that acted as bioflocculants were extracted using cold ethanol precipitation method. Protein concentration was determined by Bradford assay and protein profiling was finally completed with Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis (SDS-PAGE) method. Six species of marine bacteria known as Halomonas venusta, Bacillus cereus, Bacillus subtilis, Bacillus pumilus, Nitratireductor aquimarinus and Pseudoalteromonas sp. were successfully identified as bioflocculant-producing bacteria. The highest flocculating activity was exhibited by Bacillus cereus at 93%, while Halomonas venusta showed the lowest record at 59%. All bioflocculant-producing bacteria species showed different protein concentration that ranged between 1.377 g/mL to 1.455 g/mL. Several protein bands with different molecular weight that ranged between 16 kDa to 100 kDa were observed. This study revealed that all the identified bacteria species have high potential characteristics to initiate aquaculture wastewater treatment and may play important roles in bioflocculation process.\n\nImportanceSix species of marine bacteria isolated from biofloc of Pacific whiteleg shrimp, Litopenaeus vannamei culture ponds were identified as bioflocculant-producing bacteria. Among those six species, Bacillus cereus, Bacillus pumilus, Nitratireductor aquimarinus and Pseudoalteromonas sp. were highly potential to be used as booster for rapid formation of biofloc due to their high flocculating activities. Protein content in EPS of novel marine biofocculant-producing bacteria has beneficial consequences on degradation process of organic substances, denitrification of wastes and ions elimination from aquaculture wastes.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

che hashim, n. f., ghazali, n. a., kasan, n. a., Ismail, N., Mat Amin, N.. 2018-08-28. Description of novel marine bioflocculant-producing bacteria isolated from biofloc of pacific whiteleg shrimp, Litopenaeus vannamei culture ponds. https://doi.org/10.1101/402065

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Tandem repeats in methanogenic archaea and their viruses reveal a shared potential for rapid genomic diversification

Methanogenic archaea drive global methane emissions, yet the molecular basis of their physiological flexibility is unclear. Archaeal adaptation is typically attributed to horizontal gene transfer, which is episodic and cannot explain rapid, reversible change. Here we show that direct tandem repeats (TRs) offer an intrinsic alternative. By screening 50,567 prokaryotic genomes, we find TR densities in Methanosarcina more than 30-fold above the prokaryotic average, paralleling Borg extrachromosomal elements. These TRs recur at conserved loci while sharing almost no sequence identity between strains, indicating independent origin, and evolve during routine cultivation. Methanogen TRs are transcribed, show ribosome occupancy, and lie near regulatory and cofactor-related genes, whilst being depleted around core energy-conserving and translational machinery. Genic TRs generate intrinsically disordered regions in proteins carrying nucleotide-binding, protein-protein interaction and cell-surface domains, and occur in structural and surface proteins of methanogen-infecting viruses. TRs are therefore an overlooked source of variability and adaptation potential in methanogens and their viruses.

microbiology↗

DarHTG is a tripartite phage defence system for purine DNA base ADP-ribosylation

Bacteria evolved a variety of phage defence strategies to combat the constant onslaught of viral threats. DarTG toxin-antitoxin systems provide phage defence by ADP-ribosylation of bases in single-stranded DNA which interferes with viral replication and aborts phage infection. Here, we describe DarHTG, a system widespread among bacteria, that combines DarTG with a non-processive superfamily I helicase functioning as co-toxin for DarT and thereby enabling the ADP-ribosylation of double-stranded DNA. We identified two such DarHTG subclasses which catalyse the ADP-ribosylation of adenosine and guanosine bases, respectively, and reverse these modifications with structurally unique ARH superfamily antitoxins. Thus, DarHTG antitoxins expand the known macromolecular target spectrum of the ARH enzyme class to nucleic acids. These DarHTG systems confer resistance to a broad range of bacteriophages and can be triggered by the highly charged tails of viral single-stranded DNA-binding proteins, which occlude the active site of the ARH antitoxin.

microbiology↗

Draft genome of Paraperlucidibaca sp. CMO1 isolated from marine oil snow in the Churchill Marine Observatory, MB, Canada

An oil-degrading enrichment culture was inoculated from Marine Oil Snow (MOS) collected during an oil-spill experiment at the Churchill Marine Observatory in winter 2024. The complete metagenome-assembled genome for Paraperlucidibaca sp. CMO1 was reconstructed, exhibiting the genetic potential to degrade hydrocarbons, including alkanes and aromatic compounds, as well as the ability to produce surfactants.

microbiology↗