bioRxiv ScienceSearch

bioRxiv · 10.1101/349167

A comprehensive mycofloral diversity of pedosphere, phyllosphere and aerosphere of Som. (Persea bombycina Kost.)

Abstract

Sericulture is an important cottage industry of Assam producing natural silk of both Mulberry and Non-Mulberry silk. The sericulture industry is closely associated with the Assamese traditions and rituals. In non-mulberry silk, Muga silkworm which is endemic to North-East India only produce exquisite silks of golden color. Rearing of Muga silkworm is one of the important aspects to producing silk of high quality. The quality of the primary host plant i.e. Som (Persea bombycina Kost.) greatly affects the quality of cocoon and silk produced by these industries. Therefore, planting and growing a disease-free plant has its own importance in sericulture. However, Som is very susceptible to different foliar diseases caused by fungi, which can reduce the yield of leaf from 13.8 - 41.6% annually. Therefore, a comprehensive mycofloral study of the host plant is important to forecast the future diseases and design different disease management procedures. This study has been done for a period of two years from 2014 - 2016 in Goalpara district of Assam and overall mycoflora of pedosphere (rhizosphere and non-rhizosphere), phyllosphere and aerosphere were identified and correlated with the seasonal variation. The rhizosphere, air, and phylloplane was dominated by Rhizopus stolonifer (22.13%; 15.08; 24.01) while Aspergillus niger (12.63%) was the dominant flora of non-rhizosphere. Seasonal variation was found to play an important role in shaping the mycofloral community structure in soil and phyllosphere. In summer, soil was majorly dominated by Aspergillus niger, Aspergillus fumigatus, and Curvularia lunata while Rhizopus stolonifer, Aspergillus clavatus, Penicillium chrysogenum dominated the winter soil. In phyllosphere, the Chatuwa and Jaruwa, the winter generations were mainly dominated by Rhizopus stolonifer. While as the environmental temperature gradually increased with relative humidity in Aheruwa, Bhodia, Kotia and Jethuwa generation there was a shift in diversity with a gradual increase in occurance of Alternaria alternata, Aspergillus niger, and Aspergillus flavus. Pestaloptiopsis disseminata one of the major pathogen of Som was found highest in aerosphere followed by phyllosphere and it was only dominated in Aheruwa generation. It was found that occurrence of P. disseminata were high when the temperature ranges between 25{degrees} - 28{degrees} with 70 -80% of relative humidity. This study provides a deep insight into the fungal diversity of host plant Som with respect to pedosphere, aerosphere, and phyllosphere and this knowledge can be used to better select the plantation area and design different disease management strategies to sustain and proliferate the industry for socio-economic development and to conserve its cultural essence.

Source connections

Explore related subjects

Keep this discovery

BibTeXRIS

Das, S., Mishra, P. K.. 2018-06-18. A comprehensive mycofloral diversity of pedosphere, phyllosphere and aerosphere of Som. (Persea bombycina Kost.). https://doi.org/10.1101/349167

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

A conserved cysteine-histidine-glutamate metal site identifies DUF501 (Rv1025), an essential uncharacterised protein family of Mycobacterium tuberculosis, as a candidate metalloenzyme and drug target

A substantial fraction of the Mycobacterium tuberculosis proteome remains functionally uncharacterised. Rv1025, a 155-residue protein carrying the domain of unknown function DUF501 (Pfam PF04417), is essential by transposon mutagenesis and vulnerable by CRISPR interference, an attractive but neglected drug target, yet has never been functionally described. The family (4,370 proteins, no Gene Ontology term, no solved structure) is uncharacterised across all organisms and essential in three Actinobacterial genera. A Foldseek search of the AlphaFold model against complete structural databases finds no significant homolog, indicating a novel fold. The operon eno-divIC-Rv1025-ppx2 is conserved across the Actinobacteria phylum, yet AlphaFold-Multimer finds no direct complex between Rv1025 and its neighbour DivIC. Instead, conservation across 8,700 homologous sequences reveals a near-invariant Cys113-His115-Glu59 cluster forming a pocket. Holo AlphaFold3 predictions with Zn, Fe and Mn confidently place a divalent metal on this triad at 2.25-2.47 A; mutating the triad relocates the metal, and an independent backbone-geometry predictor recovers the same site, confirming specificity. The triad is universal across the family: present in all 1,472 near-complete bacterial sequences of the Pfam alignment, with no non-conservative substitution among the 2,228 sequences examined, a defining feature of bacterial DUF501 rather than a mycobacterial peculiarity. We propose that DUF501 is a metal-binding protein and candidate metalloenzyme, the first functional hypothesis for this family, whose conserved, essential metal pocket is a promising drug target. As the predictions build on a conservation-defined site within a fully computational study, they are supportive rather than proof of metal occupancy and warrant experimental validation.

microbiology

Mycoplasmal endosymbionts of Trichomonas vaginalis are associated with reduced risk for Chlamydia trachomatis endometrial infection in asymptomatic, coinfected, women.

Trichomonas vaginalis is a protozoan parasite that causes trichomoniasis, the most common curable non-viral sexually transmitted infection, and Chlamydia trachomatis is a bacterial pathogen that can ascend to the upper genital tract and cause pelvic inflammatory disease, infertility, and ectopic pregnancy. T. vaginalis harbors bacterial endosymbionts, including Candidatus Malacoplasma girerdii, an obligate symbiont, and Metamycoplasma hominis, which can live freely or symbiotically. In a 16S rRNA sequencing study of the cervicovaginal microbiome of women at high risk for chlamydial infection, Ca. M. girerdii abundance was one of 13 features predicting lack of chlamydial spread to the endometrium, despite no direct association between T. vaginalis infection and reduced chlamydial ascension. Investigating the relationship between these microorganisms further, we found that T. vaginalis vaginal abundance correlated positively with chlamydial burden in women whose infection was confined to the cervix, while a nonsignificant inverse relationship was seen in women with endometrial spread. Among participants with high chlamydial burden, Ca. M. girerdii was detected exclusively in women without endometrial infection. Both endosymbionts trended toward more frequent detection, and higher abundance, in coinfected women without endometrial spread, while M. hominis abundance correlated strongly with T. vaginalis burden in this group. These findings suggest that mycoplasmal endosymbionts of T. vaginalis, rather than T. vaginalis itself, are microbial factors limiting chlamydial ascension, and point to a three-way interaction between parasite, endosymbiont, and bacterial pathogen that shapes upper genital tract C. trachomatis infection risk.

microbiology

Understanding the physiological alterations of Vibrio cholerae upon exposure to L-ascorbic acid

The scourge of cholera remains a major global public health threat. It affects up to 4 million people worldwide and causes tens of thousands of deaths each year. The disease is experiencing a concerning resurgence in many parts of Africa, the Middle East, and Asia. To effectively tackle cholera and circumvent rising antimicrobial resistance, targeted biological and preventive approaches, complementing traditional rehydration, are urgently needed. In this regard, our group has demonstrated the efficacy of L-ascorbic acid in controlling the growth and pathogenesis of Vibrio cholerae in vitro. The present work further provides a mechanistic elucidation of the L-ascorbic acid-mediated physiological changes in V. cholerae and also bolsters such a non-antibiotic approach to control cholera.

microbiology