bioRxiv ScienceSearch

bioRxiv · 10.1101/346478

Principles Underlying the Input-Dependent Formation and Organization of Memories

Abstract

The brain of higher-order animals continuously and dynamically learns and adapts according to variable, complex environmental conditions. For this, the neuronal system of an agent exhibits the remarkable ability to dynamically store and organize the information of plenty of different environmental stimuli into a web of memories, which is essential for the generation of complex behaviors. The basic structures of this web are the functional organizations between two memories such as discrimination, association, and sequences. However, how these basic structures are formed robustly in an input-dependent manner by the underlying, complex and high-dimensional neuronal and synaptic dynamics is still unknown. Here, we develop a mathematical framework which reduces the complexity in several stages such that we obtain a low-dimensional mathematical description. This provides a direct link between the involved synaptic mechanisms, determining the neuronal and synaptic dynamics of the network, with the ability of the network to form diverse functional organizations. Given two widely-known synaptic mechanisms, correlation-based synaptic plasticity and homeostatic synaptic scaling, we use this new framework to identify that the interplay of these mechanisms enables the reliable formation of sequences and associations between two memory representations - missing the important functional organization of discrimination. We can show that this shortcoming can be compensated by considering a third mechanism as inhibitory synaptic plasticity. Thus, the here-presented framework and results provide a new link between diverse synaptic mechanisms and emerging functional organizations of memories. Furthermore, given our mathematical framework, one can now investigate the principles underlying the formation of the web of memories.\n\nAUTHOR SUMMARYHigher-order animals are permanently exposed to a variety of environmental inputs which have to be processed and stored such that the animal can react appropriate. Thereby, the ongoing challenge for the neuronal system is to continuously store novel and meaningful stimuli and, dependent on their content, to integrate them into the existing web of knowledge or memories. The smallest organizational entity of such a web of memories is described by the functional relation of two interconnected memories: They can be either unrelated (discrimination), mutually related (association), or uni-directionally related (sequence). However, the neuronal and synaptic dynamics underlying the formation of such structures is mainly unknown. To investigate possible links between physiological mechanisms and the organization of memories, in this work, we develop a general mathematical framework enabling analytical approach. Thereby, we show that the well-known mechanisms of synaptic plasticity and homeostatic scaling in conjunction with inhibitory synaptic plasticity enables the reliable formation of all basic relations between two memories. This work provides a further step in the understanding of the complex dynamics underlying the organization of knowledge in neural systems.

Source connections

Explore related subjects

Keep this discovery

BibTeXRIS

Herpich, J., Tetzlaff, C.. 2018-06-15. Principles Underlying the Input-Dependent Formation and Organization of Memories. https://doi.org/10.1101/346478

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

The Unreasonable Effectiveness of Cell Types in Describing Neuronal Physiological Features

Single-cell RNA sequencing (scRNA-seq) captures detailed gene expression profiles at scale, while patch-clamp recordings measure intrinsic neuronal electrophysiological properties. Modeling the relations between these two modalities remains a challenge. Here, we compare how well electrophysiological features can be predicted by traditional transcriptomic cell type classification, representations derived from a foundational model (scGPT) pretrained on large-scale scRNA-seq datasets, ion channel-coding genes, and highly variable genes. Using paired transcriptomic and electrophysiological patch-sequencing data from 495 human neurons from neurosurgical tissue, we find that cluster-level cell type representations consistently outperform highly variable gene selection, ion channel gene selection, and context-enriched scGPT embeddings. Notably, performance varies across model architectures and initializations, and the best results are obtained by combining the outputs of separate cell type and scGPT-based models. Together, these findings suggest that traditional discrete cellular classification is highly effective in predicting physiological features. For maximum performance it can be complemented by pretrained transformer models.

neuroscience

A nonlinear inhibition pathway underlying cortical responses to tuned holographic optogenetic perturbations

Optogenetics enables causal manipulation of cortical activity. Perturbation responses can be counterintuitive due to network interactions, making theory essential for predicting them. Existing approaches often rely on linear approximations, which fail for many biologically relevant perturbations. Here we develop a nonlinear theory of responses to holographic perturbations in cell-type-specific recurrent networks with structured connectivity. We fit a nonlinear model to mouse V1 data, which shows cotuned-ensemble suppression: perturbing spatially clustered neurons with similar preferred orientations yields markedly stronger short-range suppression than perturbing untuned ensembles. We show that cotuned-ensemble suppression arises from a feature-tuned, nonlinear inhibition pathway implicating somatostatin-positive (SST) interneurons. The theory predicts that cotuned ensembles suppress parvalbumin-positive (PV) neurons but facilitate SST neurons, and links the degree of cotuned-ensemble suppression or facilitation to the variance of the SST response. This framework identifies mechanisms by which nonlinear inhibition sculpts cortical dynamics and establishes a predictive basis for targeted optogenetic interventions.

neuroscience

Proteomic signatures of APOE ε4 across human tissues and cell types in Alzheimers disease

The apolipoprotein E {varepsilon}4 (APOE {varepsilon}4) allele is the strongest genetic risk factor for late-onset Alzheimers disease (AD). However, the underlying molecular mechanisms remain unclear. This study included 1691 participants from the Religious Orders Study and Rush Memory and Aging Project (ROSMAP), 1226 participants from the Accelerating Medicines Partnership - Alzheimers Disease (AMP-AD) Diverse Cohorts Study, and 735 participants from the Alzheimers Disease Neuroimaging Initiative (ADNI). To characterise APOE {varepsilon}4 molecular effects, we analysed proteomic data from plasma, cerebrospinal fluid (CSF), and induced pluripotent stem cell (iPSC)-derived astrocytes and neurons, as well as transcriptomic and proteomic data from multiple brain regions. The association of APOE {varepsilon}4 with AD neuropathology was also examined. APOE {varepsilon}4 carriers shared a plasma proteomic signature enriched for immune processes, irrespective of AD diagnosis. A machine learning classifier trained on this signature discriminated APOE {varepsilon}4 carriers from non-carriers in an independent cohort using CSF proteomics. APOE {varepsilon}4 carriage was associated with higher Braak stages and Consortium to Establish a Registry for Alzheimers Disease (CERAD) score. However, only limited APOE {varepsilon}4-associated transcriptomic and proteomic changes were observed in bulk brain tissue, with poor cross-layer concordance. Proteomic analyses of iPSC-derived astrocytes and neurons further revealed cell-type-specific APOE {varepsilon}4-associated changes. APOE {varepsilon}4 is associated with a consistent proteomic signature across plasma and CSF. Its molecular effects in the brain differ across cell types, brain regions and molecular layers. These findings support the need for cell-type-resolved multi-omic studies to elucidate how APOE {varepsilon}4 confers AD risk.

neuroscience