A Visualization Tool to Evaluate Pairwise Protein Structure Alignment Algorithms

Mukhopadhyay, A.; Bhattacharjee, S.

doi:10.1101/342899

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bioRxiv · 10.1101/342899

A Visualization Tool to Evaluate Pairwise Protein Structure Alignment Algorithms

Mukhopadhyay, A.·Bhattacharjee, S.

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Abstract

The alignment of two protein structures is a fundamental problem in structural bioinformatics. In this paper, we propose a novel approach to measure the effectiveness of a sample of three such algorithms, DALI, TM-align and EDAlignsse. The underlying premise of our approach is that structural proximity should translate into spatial proximity.

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Mukhopadhyay, A., Bhattacharjee, S.. 2018-06-08. A Visualization Tool to Evaluate Pairwise Protein Structure Alignment Algorithms. https://doi.org/10.1101/342899

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