A quasi-integral controller for adaptation of genetic modules to variable ribosome demand

Huang, H.-H.; Qian, Y.; Del Vecchio, D.

doi:10.1101/336271

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bioRxiv · 10.1101/336271

A quasi-integral controller for adaptation of genetic modules to variable ribosome demand

Huang, H.-H.·Qian, Y.·Del Vecchio, D.

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Abstract

The behavior of genetic circuits is often poorly predictable. A genes expression level is not only determined by the intended regulators, but also largely dictated by changes in ribosome availability imparted by activation or repression of other genes. To address this problem, we design a quasi-integral biomolecular feedback controller that enables the expression level of any gene of interest (GOI) to adapt to changes in available ribosomes. The feedback is implemented through a synthetic small RNA (sRNA) that silences the GOIs mRNA, and uses orthogonal extracytoplasmic function (ECF) sigma factor to sense the GOIs translation and to actuate sRNA transcription. Without the controller, the expression level of the GOI is reduced by 50% when a resource competitor is activated. With the controller, by contrast, gene expression level is practically unaffected by the competitor. This feedback controller allows adaptation of genetic modules to variable ribosome demand and thus aids modular construction of complicated circuits.

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Huang, H.-H., Qian, Y., Del Vecchio, D.. 2018-06-01. A quasi-integral controller for adaptation of genetic modules to variable ribosome demand. https://doi.org/10.1101/336271

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