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bioRxiv · 10.1101/330274

Coral: Clear and customizable visualization of human kinome data

Metz, K.·Deoudes, E. M.·Berginski, M. E.·Jimenez-Ruiz, I.·Aksoy, B. A.·Hammerbacher, J.·Gomez, S. M.·Phanstiel, D. H.
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Abstract

Protein kinases represent one ofthe largest gene families in eukaryotes and play roles in a wide range of cell signaling processes and human diseases, making them attractive targets for drug development. The human kinome is extensively featured inhigh-throughput studiesgenerating genomic, proteomic, and kinase profiling data. Current tools for visualizing kinase data in the context of the human kinome superfamily are limited to encoding data through the addition of nodes to a low-resolution image of the kinome tree. We present Coral, a user-friendly interactive webapplication for visualizing both quantitative and qualitative data. Unlike previous tools, Coral can encode data in three features (node color, node size, and branchcolor), allowsthreemodesofkinomevisualization (the traditional kinome tree as well as radial and dynamic-force networks) and generates high-resolution scalable vector graphic files suitable for publication without the need for refinement in graphic editing software. Due to its user-friendly, interactive, and highly customizable design, Coral is broadly applicable to high-throughput studies of the human kinome. The source code and web application are available at github.com/dphansti/Coral. html and phanstiel-lab.med.unc.edu/Coral respectively.

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Metz, K., Deoudes, E. M., Berginski, M. E., Jimenez-Ruiz, I., Aksoy, B. A., Hammerbacher, J., Gomez, S. M., Phanstiel, D. H.. 2018-05-25. Coral: Clear and customizable visualization of human kinome data. https://doi.org/10.1101/330274

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