bioRxiv ScienceSearch

bioRxiv · 10.1101/319616

Simulating Contact Using the Elastic Foundation Algorithm in OpenSim

Abstract

Modeling joint contact is necessary to test many questions using simulation paradigms, but this portion of OpenSim is not well understood. The purpose of this study was to provide a guide for implementing a validated elastic foundation contact model in OpenSim. First, the load-displacement properties of a stainless steel ball bearing and ultra high molecular weight polyethylene (UHMWPE) slab were recorded during a controlled physical experiment. These geometries were imported and into OpenSim and contact mechanics were modeled with the on-board elastic foundation algorithm. Particle swarm optimization was performed to determine the elastic foundation model stiffness (2.14x1011 {+/-} 6.81x109 N/m) and dissipation constants (0.999 {+/-} 0.003). Estimations of contact forces compared favorably with blinded experimental data (root mean square error: 87.58 {+/-} 1.57 N). Last, total knee replacement geometry was used to perform a sensitivity analysis of material stiffness and mesh density with regard to penetration depth and computational time. These simulations demonstrated that material stiffnesses between 1011 and 1012 N/m resulted in realistic penetrations (< 0.15mm) when subjected to 981N loads. Material stiffnesses between 1013 and 1015 N/m increased computation time by factors of 12-23. This study shows the utility of performing a simple physical experiment to tune model parameters when physical components of orthopaedic implants are not available to the researcher. It also demonstrates the efficacy of employing the on-board elastic foundation algorithm to create realistic simulations of contact between orthopaedic implants.

Source connections

Explore related subjects

Keep this discovery

BibTeXRIS

Hast, M. W., Hanson, B. G., Baxter, J. R.. 2018-05-10. Simulating Contact Using the Elastic Foundation Algorithm in OpenSim. https://doi.org/10.1101/319616

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Comparative study of chlorophyll measurement in Physcomitrium patens moss using a conventional microscope adapted for combined 2D+1D imaging and spectral analysis

Imaging spectroscopy often requires expensive and complex equipment. Here we show a simple procedure for attaching a standard miniature fiber spectrometer to a conventional microscope, allowing easy integration of 2D imaging with 1D high-resolution spectral measurements. This combination provides much of the benefit of a full imaging spectrometer without the large equipment investment, and we provide instructions for modifying microscopes to this setup and the present measurements of living cells that demonstrate their performance. Using this setup, we compare the quantitative measurement of chlorophyll concentration in Physcomitrium patens moss using color imaging and spectral sampling.

bioengineering

De novo designed single-domain antibodies protect against lethal cobra venom neurotoxicity in vivo

Generative protein design can now rapidly produce de novo binders with high affinity and functional activity against a wide range of targets, including lethal snake venom toxins. However, so far most reported successes rely on new-to-nature scaffolds with limited therapeutic precedent. Single-domain antibodies (VHHs) offer a clinically validated alternative scaffold that can bind and neutralize long-chain -neurotoxins, which are some of the most lethal components in snake venoms. Here we compare three recently established de novo design models with VHH-design capabilities (Germinal, RFantibody, and BoltzGen) for their ability to generate VHHs against the neurotoxin -cobratoxin from the monocled cobra (Naja kaouthia). Using standardized model inputs and evaluation criteria based on AlphaFold3 interface confidence (ipTM) and RMSD self-consistency, we find that Germinal was the only method to generate designs passing stringent in silico criteria for experimental testing. We therefore performed a larger Germinal design campaign employing three different VHH frameworks and experimentally validated 46 designs in vitro. Of these, 42 expressed as soluble proteins and we identified four binding hits derived from two of the three tested frameworks. Of the four binders, two lead candidates were further characterized and demonstrated high affinity (KDs of 4.1 nM and 10.8 nM), monomeric behavior and low polyreactivity, indicating favorable biophysical and developability properties, as well as functional toxin neutralization in vitro. To assess their therapeutic potential we investigated their ability to protect against -cobratoxin toxicity in vivo. Both candidates fully protected mice after -cobratoxin challenge, with 100% survival compared to a lethal control. One candidate also retained notable neutralization capacity against whole venom of Naja kaouthia with a survival of 56%, while the other protected 22% when tested in a rescue setting. Together, we demonstrate that de novo VHH design can generate high affinity single-domain antibodies with in vivo protection against lethal cobra venom neurotoxicity, and provide practical insights into method- and framework-dependent performance.

bioengineering

Simple Feedback for Complex Movement: Capturing Whole-Limb Reorganization during Single-IMU Gait Retraining

Clinical gait retraining typically relies on multi-sensor arrays and high-dimensional feedback displays, imposing setup and interpretation burdens that limit routine clinical deployment. We developed a single-IMU visual biofeedback system that delivers real-time feedback of Lower Limb Trajectory Error (LLTE), a composite kinematic error metric integrating knee position and shank angle across the stance phase. Twenty able-bodied adults walked on a treadmill under two visual biofeedback targets (flexed-knee, extended-knee) while receiving either corrected (n=10) or uncorrected (n=8) feedback, where the correction accounted for limb orientation at initial contact. LLTE and stance-phase knee kinematics adapted consistently under the flexed-knee target for both feedback groups, with feedback formulation moderating the temporal trajectory of change. Adaptation toward the extended-knee target was limited, likely because participants were already operating near terminal knee extension and because the scalar error metric provided limited directional information for correction. Ankle range of motion (ROM) changed significantly across the stance phase under both target conditions, while hip ROM did not. Multiscale multivariate sample entropy (MSMVSE) increased monotonically with time scale across all conditions, with no statistically distinguishable difference between corrected and uncorrected feedback. These results suggest that single-IMU LLTE biofeedback can modify gait mechanics and that adaptation was expressed across multiple lower-limb segments rather than through changes at a single joint.

bioengineering