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bioRxiv · 10.1101/309302

CRISPRCloud2: A cloud-based platform for deconvoluting CRISPR screen data

Jeong, H.-H.·Kim, S. Y.·Rousseaux, M. W. C.·Zoghbi, H. Y.·Liu, Z.
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Abstract

The simplicity and cost-effectiveness of CRISPR technology have made high-throughput pooled screening approaches available to many. However, the large amount of sequencing data derived from these studies yields often unwieldy datasets requiring considerable bioinformatic resources to deconvolute data; a feature which is simply not accessible to many wet labs. To address these needs, we have developed a cloud-based webtool CRISPRCloud2 that provides a state-of-the-art accuracy in mapping short reads to CRISPR library, a powerful statistical test that aggregates information across multiple sgRNAs targeting the same gene, a user-friendly data visualization and query interface, as well as easy linking to other CRISPR tools and bioinformatics resources for target prioritization. CRISPRCloud2 is a one-stop shop for labs analyzing CRISPR screen data.

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Jeong, H.-H., Kim, S. Y., Rousseaux, M. W. C., Zoghbi, H. Y., Liu, Z.. 2018-04-27. CRISPRCloud2: A cloud-based platform for deconvoluting CRISPR screen data. https://doi.org/10.1101/309302

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