Comprehensive Genetic Testing for Female and Male Infertility Using Next Generation Sequencing

Patel, B.; Parets, S.; Akana, M.; Kellogg, G.; Jansen, M.; Chang, C.; Cai, Y.; Fox, R.; Niknazar, M.; Shraga, R.; Hunter, C.; Pollock, A.; Wisotzkey, R.; Jaremko, M.; Bisignano, A.; Puig, O.

doi:10.1101/272419

bioRxiv · 10.1101/272419

Comprehensive Genetic Testing for Female and Male Infertility Using Next Generation Sequencing

Patel, B.·Parets, S.·Akana, M.·Kellogg, G.·Jansen, M.·Chang, C.·Cai, Y.·Fox, R.·Niknazar, M.·Shraga, R.·Hunter, C.·Pollock, A.·Wisotzkey, R.·Jaremko, M.·Bisignano, A.·Puig, O.

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Abstract

ObjectiveTo develop a comprehensive genetic test for female and male infertility in support of medical decisions during assisted reproductive technology (ART) protocols.\n\nDesignRetrospective analysis of results from 118 DNA samples with known variants in loci representative of female and male infertility.\n\nInterventions(s)None\n\nMain Outcome Measure(s)Next-Generation Sequencing (NGS) of 87 genes including promoters, 5 and 3 untranslated regions, exons and selected introns. In addition, sex chromosome aneuploidies and Y chromosome microdeletions are analyzed concomitantly using the same panel.\n\nResultsAnalytical accuracy was >99%, with >98% sensitivity for Single Nucleotide Variants (SNVs) and >91% sensitivity for insertions/deletions (indels). Clinical sensitivity was assessed with samples containing variants representative of male and female infertility, and it was 100% for SNVs/indels, CFTR IVS8-5T variants, sex chromosome aneuploidies and Copy Number Variants (CNVs), and >93% for Y chromosome microdeletions. Cost analysis comparing the NGS assay with standard, multiple analysis approach, shows potential savings of $2723 per case. Conclusion: A single, comprehensive, NGS panel can simplify the ordering process for healthcare providers, reduce turnaround time, and lower the overall cost of testing for genetic assessment of infertility in females and males, while maintaining accuracy.

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Patel, B., Parets, S., Akana, M., Kellogg, G., Jansen, M., Chang, C., Cai, Y., Fox, R., Niknazar, M., Shraga, R., Hunter, C., Pollock, A., Wisotzkey, R., Jaremko, M., Bisignano, A., Puig, O.. 2018-02-28. Comprehensive Genetic Testing for Female and Male Infertility Using Next Generation Sequencing. https://doi.org/10.1101/272419

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