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bioRxiv · 10.1101/266080

ReadFilter - Filtering reads of interest for quicker downstream analysis

Ng, K. L.·Johannesen, T. B.·Osterlund, M.·Kiil, K.·Andersen, P. S.·Stegger, M.
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Abstract

Whole-genome sequencing is becoming the method of choice but provides redundant data for many tasks. ReadFilter (https://github.com/ssi-dk/serum_readfilter) is offered as a way to improve run time of these tasks by rapidly filtering reads against user-specified sequences in order to work with a small fraction of original reads while maintaining accuracy. This can noticeably reduce mapping time and substantially reduce de novo assembly time.

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Ng, K. L., Johannesen, T. B., Osterlund, M., Kiil, K., Andersen, P. S., Stegger, M.. 2018-02-15. ReadFilter - Filtering reads of interest for quicker downstream analysis. https://doi.org/10.1101/266080

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