Peripheral infrastructure vectors and an extended set of plant parts for the modular cloning system

Gantner, J.; Ilse, T.; Ordon, J.; Kretschmer, C.; Gruetzner, R.; Loefke, C.; Dagdas, Y.; Buerstenbinder, K.; Marillonnet, S.; Stuttmann, J.

doi:10.1101/237768

bioRxiv · 10.1101/237768

Peripheral infrastructure vectors and an extended set of plant parts for the modular cloning system

Gantner, J.·Ilse, T.·Ordon, J.·Kretschmer, C.·Gruetzner, R.·Loefke, C.·Dagdas, Y.·Buerstenbinder, K.·Marillonnet, S.·Stuttmann, J.

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Abstract

Standardized DNA assembly strategies facilitate the generation of multigene constructs from collections of building blocks in plant synthetic biology. A common syntax for hierarchical DNA assembly following the Golden Gate principle employing Type IIs restriction endonucleases was recently developed, and underlies the Modular Cloning and GoldenBraid systems. In these systems, transcriptional units and/or multigene constructs are assembled from libraries of standardized building blocks, also referred to as phytobricks, in several hierarchical levels and by iterative Golden Gate reactions. This combinatorial assembly strategy meets the increasingly complex demands in biotechnology and bioengineering, and also represents a cost-efficient and versatile alternative to previous molecular cloning techniques. For Modular Cloning, a collection of commonly used Plant Parts was previously released together with the Modular Cloning toolkit itself, which largely facilitated the adoption of this cloning system in the research community. Here, a collection of approximately 80 additional phytobricks is provided. These phytobricks comprise e.g. modules for inducible expression systems, different promoters or epitope tags, which will increase the versatility of Modular Cloning-based DNA assemblies. Furthermore, first instances of a \"peripheral infrastructure\" around Modular Cloning are presented: While available toolkits are designed for the assembly of plant transformation constructs, vectors were created to also use coding sequence-containing phytobricks directly in yeast two hybrid interaction or bacterial infection assays. Additionally, DNA modules and assembly strategies for connecting Modular Cloning with Gateway Cloning are presented, which may serve as an interface between available resources and newly adopted hierarchical assembly strategies. The presented material will be provided as a toolkit to the plant research community and will further enhance the usefulness and versatility of Modular Cloning.

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Gantner, J., Ilse, T., Ordon, J., Kretschmer, C., Gruetzner, R., Loefke, C., Dagdas, Y., Buerstenbinder, K., Marillonnet, S., Stuttmann, J.. 2017-12-21. Peripheral infrastructure vectors and an extended set of plant parts for the modular cloning system. https://doi.org/10.1101/237768

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