YAMP: a framework enabling reproducibility in metagenomics research

Visconti, A.; Martin, T. C.; Falchi, M.

doi:10.1101/223016

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bioRxiv · 10.1101/223016

YAMP: a framework enabling reproducibility in metagenomics research

Visconti, A.·Martin, T. C.·Falchi, M.

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Abstract

YAMP is a user-friendly workflow that enables the analysis of whole shotgun metagenomic data while using containerisation to ensure computational reproducibility and facilitate collaborative research. YAMP can be executed on any UNIX-like system, and offers seamless support for multiple job schedulers as well as for Amazon AWS cloud. Although YAMP has been developed to be ready-to-use by non-experts, bioinformaticians will appreciate its flexibility, modularisation, and simple customisation.\n\nThe YAMP script, parameters, and documentation are available at https://github.com/alesssia/YAMP.

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Visconti, A., Martin, T. C., Falchi, M.. 2017-11-21. YAMP: a framework enabling reproducibility in metagenomics research. https://doi.org/10.1101/223016

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