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bioRxiv · 10.1101/217505

MODE-TASK: Large-scale protein motion tools

Ross, C.·Nizami, B.·Glenister, M.·Sheik Amamuddy, O.·Atilgan, A. R.·Atilgan, C.·Tastan Bishop, O.
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Abstract

SummaryMODE-TASK, a novel software suite, comprises Principle Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using molecular dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive.\n\nAvailability and ImplementationMODE-TASK has been open-sourced, and is available for download from https://github.com/RUBi-ZA/MODE-TASK, implemented in Python and C++.\n\nSupplementary informationDocumentation available at http://mode-task.readthedocs.io.

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Ross, C., Nizami, B., Glenister, M., Sheik Amamuddy, O., Atilgan, A. R., Atilgan, C., Tastan Bishop, O.. 2017-11-10. MODE-TASK: Large-scale protein motion tools. https://doi.org/10.1101/217505

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