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bioRxiv · 10.1101/2025.11.19.689070

Volatilized ammonia supports extremophilic cave ecosystems with unusual nitrogen isotopic signatures

Abstract

The sulfidic Frasassi cave system hosts a robust, subterranean ecosystem based on microbial lithoautotrophy. Curiously, acidic biofilms forming above degassing sulfidic cave streams, and the invertebrates that feed on them, are extremely depleted in nitrogen-15 ({delta}15N values less than -20{per thousand}). In this study, we tested the hypothesis that these low {delta}15N values result from the volatilization, trapping, and uptake of ammonia degassed from the circumneutral streams. We found that dissolved ammonium in the streams had {delta}15N values near +3{per thousand}, whereas NH3(g) in the cave atmosphere above streams exhibited {delta}15N values as low as -27{per thousand}, consistent with fractionation by NH3 volatilization. Extremely acidic condensation droplets on cave walls efficiently trapped airborne NH3, accumulating up to 4 mM NH4+ with {delta}15N values as low as -29{per thousand}, thereby confirming volatilized and trapped ammonia as the primary N source to cave wall biofilms and the extensive subsurface ecosystem they support. Airborne ammonia trapping represents a novel mechanism for biological N acquisition and provides abundant N for growth in an extreme subsurface environment that otherwise receives very limited nutrient input. SignificanceNitrogen is one of the most abundant elements in organic molecules, and is a key limiting nutrient in many ecosystems. We showed that acidic microbial biofilms in sulfidic caves scavenge trace amounts of airborne ammonia, enabling microbial primary production and supporting associated food webs, including animals, in an environment where nitrogen is otherwise extremely scarce. This process represents a novel mechanism of biological nutrient acquisition and results in biomass and organic matter more depleted in the heavy isotope of nitrogen (15N) than almost all other biological materials on Earth. Extreme 15N isotope depletion is therefore a potential signature of acidic underground ecosystems on Earth and other planetary bodies.

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BibTeXRIS

Best, M. B. B., Wankel, S. D., Graham, H. V., Stern, J. C., Macalady, J. L., Mainiero, M., Recanatini, S., Mariani, S., D'Angeli, I., Vaccarelli, I., Jones, D. S.. 2025-11-19. Volatilized ammonia supports extremophilic cave ecosystems with unusual nitrogen isotopic signatures. https://doi.org/10.1101/2025.11.19.689070

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