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bioRxiv · 10.1101/2025.10.27.684899

Deciphering the intra-tissue specific Collagen PTMs site-specific heterogeneity in Human Adrenal extracellular-matrix

Joshi, A.·Nigam, A.·Kremer, J. L.·Lotfi, C. F. P.·Mondal, B.·Basak, T.
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Abstract

The human adrenal is one of the pivotal glands of the endocrine system. Recently, the extracellular matrix (ECM) of the adrenal capsule and cortex was explored by dividing them into two fractions: outer (OF) and inner (IF). A significant variation in the levels of ECM proteins, including collagens, was documented. During the biosynthesis of collagen, it undergoes a plethora of PTMs exhibiting crucial roles such as cell-matrix interaction, adhesion, crosslinking, stability, etc. However, the site-specific identification and characterization of collagen PTMs remained challenging and is unknown for the human adrenal gland. We applied our in-house developed proteomics pipeline to identify several PTMS in 25 collagen chains from human adrenal-ECM. In the entire collagenome, we identified a total of 963 4-hydroxyproline (4-HyP), 201 3-hydroxyproline (3-HyP), 105 hydroxylysine (HyK), 17 galactosyl-hydroxylysine (G-HyK), and 35 glucosyl galactosyl-hydroxylysine (GG-HyK) sites. Although the site-specificity of collagen PTMs (3-HyP, HyK, G/GG-HyK) across fractions is conserved, the occupancies were different in a site-specific manner. Classically, a fully 3-hydroxylated site (P1164) of COL1A1 associated with osteogenesis imperfecta was found to be approximately fully hydroxylated ([~]99%) across fractions. Similarly, we also looked at the microheterogeneity of lysine modifications on one lysine residue (K862) of COL1A1. We observed that the hydroxylation level was higher in OF, while glycosylation levels were higher in IF. This may suggest a change in the crosslinking of collagen I across both fractions. Further, our analysis revealed much higher site-specific O-glycosylation in basement membrane collagen-IV, potentially facilitating the secretion of steroids from the adrenal gland. For the first time, we have annotated the collagen PTMs, developed a COL1A1 PTM map, and quantitated site-specific PTMs in the human adrenal gland. Taken together, this work revealed that intra-tissue-specific site-specific PTM collagen heterogeneity and lay the foundation for understanding their role in region-specific functions.

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Joshi, A., Nigam, A., Kremer, J. L., Lotfi, C. F. P., Mondal, B., Basak, T.. 2025-10-27. Deciphering the intra-tissue specific Collagen PTMs site-specific heterogeneity in Human Adrenal extracellular-matrix. https://doi.org/10.1101/2025.10.27.684899

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