bioRxiv Science⌕ Search
Home/Archive/bioRxiv

bioRxiv · 10.1101/2025.10.13.681720

Functional MRI signals as fast as 1Hz are coupled to brain states and predict spontaneous neural activity

Jacob, L. P. L.·Bailes, S. M.·Stringer, C.·Polimeni, J. R.·Lewis, L. D.
View original source ↗Export metadata ↓

Abstract

Technological advances have enabled fMRI acquisition with high temporal resolution, enabling brainwide imaging in just a few hundreds of milliseconds. However, the relationship between fast hemodynamic signals and spontaneous neural activity in the resting state is not yet well understood, limiting our ability to infer neural processes from these fast data. We hypothesized that high-frequency fMRI signals are linked to spontaneous neural activity tied to vigilance states, and that these high-frequency signals could be used to infer the dynamic variations in neuronal activity indexed by EEG neural rhythms. Using fast fMRI (TR=378 ms) and simultaneous EEG in 27 humans drifting between sleep and wakefulness, we found that fMRI power increased during NREM sleep (compared to wakefulness) in frequencies up to 1.3 Hz. High-frequency fMRI power was also correlated to canonical arousal-linked EEG rhythms (alpha and delta), with spatiotemporal cross-correlation patterns reflecting both shared arousal dynamics and rhythm-specific signatures. Using machine learning, we found that EEG alpha and delta power can be decoded from high-frequency fMRI signals in subjects held-out from the training set, showing that the high-frequency components of fMRI signals contain neurally-coupled information robust enough to generalize across individuals. These results reveal that high-frequency fMRI signals are coupled to dynamically varying brain states, and that fast fMRI allows for temporally precise quantification of spontaneous neural activity. Significance StatementFunctional MRI enables non-invasive brainwide neuroimaging in humans, but classically had limited temporal resolution. Recently, studies demonstrated that fast fMRI sampling can detect stimulus-evoked neural activity at subsecond timescales. However, it was unknown whether spontaneous neural activity is represented in fast fMRI signals. Using fMRI and simultaneous EEG in subjects who fell asleep, we found that EEG neural activity associated with sleep and wakefulness is represented in high-frequency fMRI signals. The results reveal that fast fMRI sampling can be used to investigate the spontaneous neural activity underlying brain states with high temporal precision.

Explore related subjects

neurosciencePreprint

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Jacob, L. P. L., Bailes, S. M., Stringer, C., Polimeni, J. R., Lewis, L. D.. 2025-10-14. Functional MRI signals as fast as 1Hz are coupled to brain states and predict spontaneous neural activity. https://doi.org/10.1101/2025.10.13.681720

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

bioRxiv2026

Same Movements, Different Skills: How Context Shapes Learning in Humans and Neural Networks

What determines whether experiences are integrated into shared representations or split? Motor skill learning offers a revealing test: when two tasks require an identical sequence of movements, both intuition and theory suggest that practice in one should generalize to the other. Yet we find that changing context can make identical movements different skills. In simple recurrent networks trained on the same sequence across contexts, splitting was greatest when strong contextual inputs coincided with a high initial weight scale; neither alone sufficed. Greater representational separation coincided with separate context-specific learning curves. Humans practicing the same finger sequence while alternating between two performance-irrelevant contexts likewise exhibited context-specific curves, rather than the single continuous trajectory observed when practicing in a single context. State-space modeling favored split learning states in humans and very weakly coupled states in the most context-dependent networks. These findings have broader implications for understanding how learning generalizes across contexts.

neuroscience↗
bioRxiv2026

Postpartum resource scarcity reshapes maternal care, offspring prioritization, and the steroid-sensitive medial preoptic area

Parental care requires balancing offspring needs with environmental constraints, yet how resource scarcity alters the organization of maternal responses remains poorly understood. Here, we examined maternal behavior, offspring prioritization, and steroid receptor-associated extracellular matrix organization in postpartum rats exposed to limited bedding and nesting (LBN) or control conditions with ample nesting materials. LBN increased pup-directed and reduced self-directed behaviors but also increased behavioral entropy, a measure of behavioral fragmentation, indicating less predictable caregiving sequences. LBN dams preferentially retrieved male pups first, whereas control dams preferentially retrieved females first. LBN also increased the proportion of pup-investigation time directed toward males compared with controls. In offspring on postnatal day 10, corticosterone was elevated in female but not male LBN pups, a pattern that paralleled the maternal male bias. To identify associated neurobiological changes, we assessed steroid receptors and extracellular matrix organization in the medial preoptic area (mPOA), a key region for maternal behavior. LBN increased numbers of estrogen receptor (ER)- and androgen receptor (AR)-immunoreactive cells, reduced perineuronal net (PNN) abundance, and decreased receptor-positive cell enwrapment. Because PNNs constrain structural plasticity, these findings suggest that the postpartum environment alters the organization of steroid receptor-associated extracellular matrix, potentially modulating experience-dependent plasticity in neurosteroid-sensitive circuits. In sum, LBN increases the levels of maternal engagement while reshaping its temporal organization and allocation, accompanied by selective remodeling of steroid-sensitive preoptic architecture. Therefore, maternal adaptation to adversity may be better understood as changes in caregiving allocation strategies rather than a simple gain or loss of maternal care.

neuroscience↗
bioRxiv2026

The Computational Grammar of Human Behaviour in a Biological Environment

Human behaviour unfolds as an extended stream of spontaneous actions shaped by environmental demands and the agent's goals. The organisation of these actions, situated between setting abstract goals and concrete movement execution, remains poorly characterised. Here, we introduce DynaClade, an unsupervised temporal action segmentation algorithm for human full-body motion capture data, and apply it to freely moving participants navigating ecologically realistic risky foraging environments in virtual reality. DynaClade identifies discrete actions whose kinematic characteristics and spatial distributions correspond to environmental affordances, supporting the validity of the approach. Among these actions, we discovered a hitherto undescribed movement pattern defined by increased body sway without locomotion. Action sequences were highly non-random and showed clear history dependence beyond first-order Markov structure, most of which was explained by a second-order prediction. This higher-order structure was well captured in a hidden Markov model, in which some of the observed actions were associated with more than one latent state. Each of these latent states corresponded to the same action in a distinct action context. These findings suggest that spontaneous human actions are predominantly selected based on the current action and context, rather than following pre-planned or habitually assembled sequences.

neuroscience↗