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bioRxiv · 10.1101/2025.09.29.679341

GABAA receptor gating imaged on the millisecond timescale

Mihaylov, D. B.·Malinauskas, T.·Cymes, G. D.·Miehling, J.·Chang, V. T.·Naydenova, K.·Grosman, C.·Aricescu, A. R.
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Abstract

Type-A {gamma}-aminobutyric receptors (GABAARs) are fast pentameric ligand gated ion channels (pLGICs)1-5. Within a millisecond, saturating agonist concentrations trigger activity bursts consisting of high-frequency fluctuations between conductive and non-conductive states6,7. These can last for tens to hundreds of milliseconds until, stochastically, receptors adopt stable, long-lived, desensitised conformations2,8,9. This highly dynamic process, known as gating, controls transient passages of chloride ions across plasma membranes to enable neurotransmission and other fundamental processes in animal physiology10-12. The conformational transitions inside activity bursts, inferred from electrophysiology, have remained inaccessible to structural biology investigation. Here we describe the gating motions of three GABAA receptor variants imaged within the first 10 milliseconds of agonist application by cryogenic electron microscopy (cryo-EM)13. We illustrate how activation and desensitisation proceed through multiple asymmetric states, supported by major secondary, tertiary and quaternary structural rearrangements, and demonstrate that the same gating principles apply to both homomeric and heteromeric GABAARs. Furthermore, we show that cholesterol and phospholipids stabilise newly formed inter-subunit interfaces and obstruct channel pores in short-lived desensitised states, while phosphatidylinositol 4,5-bisphosphate (PIP2) precludes the opening of both 1{beta}3 and 1{beta}3{gamma}2 GABAAR channels. Our results provide a novel framework to interpret decades of electrophysiology observations and suggest a broadly applicable approach to investigate mechanistically the vast arrays of physiological and pharmacological modulators of GABAARs5,14 and other fast neurotransmitter receptors15,16. Moreover, the subunit interfaces and lipid-binding pockets that form and disappear during GABAAR gating provide new opportunities to discover modulators with improved specificity and therapeutic properties. One sentence summarySingle-particle cryo-EM was used to explore the dynamic conformational landscape of three human GABAA receptor variants within the first 10 milliseconds of interaction with their neurotransmitter agonists.

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Mihaylov, D. B., Malinauskas, T., Cymes, G. D., Miehling, J., Chang, V. T., Naydenova, K., Grosman, C., Aricescu, A. R.. 2025-09-30. GABAA receptor gating imaged on the millisecond timescale. https://doi.org/10.1101/2025.09.29.679341

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