Perfect imperfections: seeking molecular and cellular asymmetries in the mouse brain

Houwing, D. J.; Wang, M.-Y.; Silberfeld, A.; van Hulten, J. A.; Lütje, L.; Homberg, J. R.; Fisher, S. E.; Grandjean, J.; Francks, C.

doi:10.1101/2025.09.11.675542

bioRxiv · 10.1101/2025.09.11.675542

Perfect imperfections: seeking molecular and cellular asymmetries in the mouse brain

Houwing, D. J.·Wang, M.-Y.·Silberfeld, A.·van Hulten, J. A.·Lütje, L.·Homberg, J. R.·Fisher, S. E.·Grandjean, J.·Francks, C.

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Abstract

Although perfect symmetry is a mathematical ideal, many Bilateria exhibit left-right asymmetries of body, brain and behavior that are adaptive 1-3. In the human brain, various aspects of cognition are lateralized, including language 4 and handedness 5, which rely on left hemisphere dominance in most people. Brain hemispheric specialization can support parallel processing, neural efficiency, and action selection 3,6, while atypical structural or functional asymmetries are often found in neuropsychiatric disorders 7-10. Mice may be useful models for studying brain asymmetry because they show hemispheric differences of structure 11,12 and neurophysiology 13, but the extent to which molecular and cellular differences are involved remains unknown. We applied spatial transcriptomics with single molecule resolution to coronal sections from 31 adult mouse brains, to assess left-right differences of gene expression and cell types. Sections were chosen to capture the hippocampus and auditory cortex, as these two regions have shown the most prior evidence for functional asymmetry 13-15. In the hippocampus, Crhr1 (Corticotropin-Releasing Hormone Receptor 1) was more highly expressed in the pyramidal layers of CA1, CA3 and the dentate gyrus of the left hemisphere compared to the right. In the auditory cortex, three principal components capturing transcriptomic variation showed hemispheric differences, including prominent contributions from genes that have shown associations with human brain asymmetry. Overall cellular density and cell type proportions generally showed no significant hemispheric differences, with Car3 cortical excitatory neurons showing the most laterality. The transcriptional left-right differences that we found may relate to functional asymmetries for learning, memory and hearing. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=195 SRC="FIGDIR/small/675542v1_ufig1.gif" ALT="Figure 1"> View larger version (119K): org.highwire.dtl.DTLVardef@1530502org.highwire.dtl.DTLVardef@16dd244org.highwire.dtl.DTLVardef@107950corg.highwire.dtl.DTLVardef@ca52a3_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIMolecular and cellular basis of functional brain asymmetry is barely known C_LIO_LISpatial transcriptomics with cellular resolution applied to mouse brain coronal sections C_LIO_LIGenes implicated in human brain asymmetry showed hemispheric differences in mice C_LIO_LINo hemispheric differences of cell type abundances C_LI

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Houwing, D. J., Wang, M.-Y., Silberfeld, A., van Hulten, J. A., Lütje, L., Homberg, J. R., Fisher, S. E., Grandjean, J., Francks, C.. 2025-09-11. Perfect imperfections: seeking molecular and cellular asymmetries in the mouse brain. https://doi.org/10.1101/2025.09.11.675542

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