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bioRxiv · 10.1101/2025.09.03.674028

A Design-of-Experiments Strategy for Engineering 3D Topographical Features in Osteosarcoma Modelling

Midkhatov, K.·Taylor, G.·Stevens, L.·Amer, M. H.
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Abstract

Osteosarcoma is a highly aggressive bone cancer with poor patient outcomes, partly due to the limited predictive power of current preclinical models. Conventional two-dimensional (2D) cultures fail to recapitulate physiologically relevant cell-matrix interactions, while animal models suffer from inter-species variability. To investigate how extracellular matrix (ECM) topographical features influence osteosarcoma behaviour, polylactic acid-based microparticles were engineered with bone-mimetic stiffness and defined surface topographies, guided by a Design-of-Experiments (DoE) approach. This enabled systematic variation of microparticle architecture (8-63 {micro}m diameter; 2-13 {micro}m dimple size) for studying the impact of surface topography on osteosarcoma cell behaviour in 3D culture, with doxorubicin treatment as a functional test to evaluate the effect of 3D topographical cues on chemotherapy sensitivity. Topography modulated cell-microparticle aggregation dynamics. At 96 hours post-seeding, MG-63 cells displayed significantly reduced metabolic activity on all 3D microparticle designs, with heterogeneously dimpled-topography cultures displaying significantly lower DNA content than conventional 2D cultures. In U2OS cells, metabolic activity was significantly lower on smooth microparticles compared to dimpled designs, with all 3D cultures showing significantly lower DNA content versus 2D. Response to doxorubicin was more strongly influenced by culture dimensionality than surface topography, underscoring the importance of 3D context. Significant metabolic differences between 3D and 2D cultures were observed, including the enrichment of amino acid related pathways and downregulation of ferroptosis signatures in 3D microparticle cultures. Topography displayed subtler effects on lipid and nucleotide metabolism. This study highlights how topographically-patterned 3D substrates can shape osteosarcoma cell behaviour and drug response for disease modelling applications. Our DoE-guided platform enables systematic investigation for dissecting how ECM-inspired physical cues influence osteosarcoma progression and therapeutic resistance. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=99 SRC="FIGDIR/small/674028v1_ufig1.gif" ALT="Figure 1"> View larger version (44K): org.highwire.dtl.DTLVardef@42352aorg.highwire.dtl.DTLVardef@b066e4org.highwire.dtl.DTLVardef@13322e3org.highwire.dtl.DTLVardef@377d4a_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Midkhatov, K., Taylor, G., Stevens, L., Amer, M. H.. 2025-09-03. A Design-of-Experiments Strategy for Engineering 3D Topographical Features in Osteosarcoma Modelling. https://doi.org/10.1101/2025.09.03.674028

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