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bioRxiv · 10.1101/2025.09.01.673435

High-resolution spatial analysis reveals pregnenolone metabolism as a potential target for immuno-suppressive microenvironment of BRAF mutant colorectal cancer

Wang, X.·Zhao, Z.·Liu, L.·Cheng, J.·Ba, Y.
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Abstract

BRAF mutant colorectal cancer (CRC) is highly aggressive and often resistant to traditional therapies, presenting a significant challenge in cancer immunotherapy. Understanding the tumor microenvironment (TME) and identifying novel immune checkpoints are crucial for improving treatment outcomes. Here, we employed high-resolution spatial analysis and single-cell RNA sequencing to map the TME of BRAF mutant CRC at single-cell resolution, focusing on the interactions between exhausted CD8+ T cells and C1QC+ macrophages. Mechanistically, we discovered that C1QC+ macrophages drive CD8+ T cell exhaustion through pregnenolone synthesis via the steroidogenic enzyme CYP11A1. Our findings identify pregnenolone metabolism as a previously unrecognized immunosuppressive pathway in BRAF mutant CRC, and suggest that steroid biosynthesis is a generalizable mechanism of immune evasion beyond endocrine-related malignancies. Targeting this pathway offers a promising therapeutic strategy for enhancing anti-tumor immunity in BRAF mutant CRC and potentially other cancers.

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Wang, X., Zhao, Z., Liu, L., Cheng, J., Ba, Y.. 2025-09-03. High-resolution spatial analysis reveals pregnenolone metabolism as a potential target for immuno-suppressive microenvironment of BRAF mutant colorectal cancer. https://doi.org/10.1101/2025.09.01.673435

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