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bioRxiv · 10.1101/2025.08.01.668145

TRACC-PHYSIO: Time-domain Resolution-Aligned Cross-Correlation to estimate PHYSIOlogical coupling and time delays in dynamic MRI

Wright, A.·Zhang, J.·Tong, Y.·Wen, Q.
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Abstract

Physiological brain pulsations, primarily driven by cardiac and respiratory activity, play a key role in driving neurofluid circulation and waste clearance. Capturing the temporal dynamics of cardiac- and respiratory-driven brain pulsations (0.2-1.5 Hz) requires fast imaging with TRs near 100 ms, which is often unachievable in functional MRI or dynamic diffusion MRI. As a result, valuable physiological information remains hidden in these datasets. Here, we introduce TRACC-PHYSIO, a time-domain analytical framework designed to quantify physiological coupling and pulse time delays in dynamic MRI without requiring a fast acquisition. TRACC-PHYSIO uses cross-correlation to detect co-fluctuations between slowly sampled dynamic MRI data and simultaneously recorded physiological waveforms. It measures two key metrics: the peak Coupling Coefficient (peak CorrCoeff), quantifying the strength of co-fluctuations, and the TimeDelay, reflecting the relative arrival time of the physiological impulse in the brain with millisecond-level temporal resolution. The primary aim of this study is to validate TRACC-PHYSIO through systematic simulations that model realistic dynamic MR signals with mixed physiological components. We comprehensively evaluate TRACC-PHYSIOs performance under a wide range of conditions, including varying cardiac-to-respiratory composition ratios, TRs, and acquisition times. Results demonstrate that TRACC-PHYSIO can robustly assess coupling strengths and time delays for both cardiac (TRACC-Cardiac) and respiratory (TRACC-Respiratory) components, even in datasets with long TRs up to 3 seconds. By enabling a reliable time-domain coupling analysis, TRACC-PHYSIO opens new avenues for revealing brain pulsation mechanisms and elucidating the physiological drivers of neurofluid dynamics in health and disease. This stimulation study provides a valuable reference for interpreting TRACC-PHYSIO results and understanding associated uncertainties in future applications. Highlights- TRACC-PHYSIO is a time-domain method developed to estimate cardiac and respiratory coupling and their pulsation time delays in dynamic MRI without requiring high temporal resolution. - TRACC-PHYSIO was validated through systematic simulations across varying physiological compositions and MR acquisition parameters. - Results demonstrated that TRACC-PHYSIO reliably quantifies cardiac and respiratory components in dynamic MR signals. - The stimulation study provides a useful reference for interpreting TRACC-PHYSIO results and understanding associated uncertainties in future applications.

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Wright, A., Zhang, J., Tong, Y., Wen, Q.. 2025-08-02. TRACC-PHYSIO: Time-domain Resolution-Aligned Cross-Correlation to estimate PHYSIOlogical coupling and time delays in dynamic MRI. https://doi.org/10.1101/2025.08.01.668145

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