Unravelling the role of epigenetic regulators during embryonic development of Rhipicephalus micropolus

Amarante, A. d. M.; de Oliveira, D. M.; de Souza, M. P. N. C.; Oliveira, M. F.; Galina, A.; Rosignoli, S.; Arcanjo, A. F.; Moraes, B.; Paiardini, A.; Li Yasumura, J. D. d. P.; Henaut-Jacobs, S.; Venancio, T. M.; Uhl, M.; da Fonseca, R. N.; Parizi, L. F.; Vaz Junior, I. d. S.; Mermelstein, C. d. S.; Tirloni, L.; Logullo, C.; Fantappie, M. R.

doi:10.1101/2025.07.11.662657

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bioRxiv · 10.1101/2025.07.11.662657

Unravelling the role of epigenetic regulators during embryonic development of Rhipicephalus micropolus

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Abstract

Epigenetic modifications are long-lasting changes to the genome that influence a cells transcriptional potential, thereby altering its function. These modifications can trigger adaptive responses that impact protein expression and various cellular processes, including differentiation and growth. The primary epigenetic mechanisms identified to date include DNA and RNA methylation, histone modifications, and microRNA-mediated regulation of gene expression. The intricate crosstalk among these mechanisms makes epigenetics a compelling field for the development of novel control strategies, particularly through the use of epigenetic drugs targeting arthropod vectors such as ticks. In this study, we identified the Rhipicephalus microplus orthologs of canonical histone-modifying enzymes, along with components of the machinery responsible for m5C and 6mA-DNA, and m6A-RNA methylations. We further characterized their transcriptional profiles and enzymatic activities during embryonic development. To explore the functional consequences of epigenetic regulation in R. microplus, we evaluated the effects of various epigenetic inhibitors on the BME26 tick embryonic cell line. Molecular docking simulations were performed to predict the binding mode of these inhibitors to tick enzymes, followed by in vitro assessment of their effects on cell viability and morphology. Tick cells exposed to these inhibitors exhibited phenotypic and molecular alterations. Notably, we observed higher levels of DNA methylation in the mitochondrial genome compared to nuclear DNA. Inhibition of DNA methylation using 5-azacytidine (5-AZA) was associated with increased activity of the mitochondrial electron transport chain and ATP synthesis, but reduced cellular proliferation. Our findings highlight the importance of epigenetic regulation during tick embryogenesis and suggest that targeting these pathways may offer a novel and promising strategy for tick control. HighlightsO_LIR. microplus presents a complete set of epigenetic enzymes that modify histones, DNA and RNA C_LIO_LIEpigenetic regulation is highly dynamic, and functionally significant during R. microplus embryogenesis C_LIO_LIInhibition of DNA methylation leads to overactivation of the mitochondrial electron transport chain C_LI

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Amarante, A. d. M., de Oliveira, D. M., de Souza, M. P. N. C., Oliveira, M. F., Galina, A., Rosignoli, S., Arcanjo, A. F., Moraes, B., Paiardini, A., Li Yasumura, J. D. d. P., Henaut-Jacobs, S., Venancio, T. M., Uhl, M., da Fonseca, R. N., Parizi, L. F., Vaz Junior, I. d. S., Mermelstein, C. d. S., Tirloni, L., Logullo, C., Fantappie, M. R.. 2025-07-11. Unravelling the role of epigenetic regulators during embryonic development of Rhipicephalus micropolus. https://doi.org/10.1101/2025.07.11.662657

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