Structural and Evolutionary Constraints of Organophosphate Resistance in Dipteran Carboxylesterases

Frkic, R.; Giang, A.; Liu, J.-W.; Esmaeily, M.; Carr, P. D.; Fraser, N. J.; Hopkins, D.; Oakeshott, J. G.; Batterham, P.; Mabbitt, P. D.; Jackson, C. J.

doi:10.1101/2025.07.07.663592

bioRxiv · 10.1101/2025.07.07.663592

Structural and Evolutionary Constraints of Organophosphate Resistance in Dipteran Carboxylesterases

Frkic, R.·Giang, A.·Liu, J.-W.·Esmaeily, M.·Carr, P. D.·Fraser, N. J.·Hopkins, D.·Oakeshott, J. G.·Batterham, P.·Mabbitt, P. D.·Jackson, C. J.

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Abstract

Enzymatic detoxification of organophosphate (OP) insecticides can confer resistance in some insects, yet the precise molecular basis of this trait, and how it has evolved, remains poorly understood. In certain dipteran species, a G[->]D mutation in the oxyanion hole of -carboxylesterases (CBEs) enhances OP hydrolysis, yet this adaptation is not widespread despite the presence of orthologous CBEs in other insect species that are also exposed to OPs. The extent, and molecular basis, of evolutionary contingency and epistasis in this catalytic OP resistance has not been explored, and how further mutations might optimize OP detoxification in the future is not clear. Here, we systematically compare OP hydrolysis and analyse structures of CBE orthologs across several dipteran species, revealing that the success of the G137D mutation is sequence context-dependent. We employed laboratory-directed evolution to enhance OP turnover over 1000-fold vs. the wild-type enzyme and tested these variants in transgenic Drosophila melanogaster, demonstrating that improved catalytic rates do not directly translate to increased resistance. By highlighting the trade-off between organophosphate affinity and turnover, this work further clarifies the complex evolutionary trajectories determining why a particular resistance mechanism may evolve in some species but not others. SignificanceThis study reveals the intricate evolutionary path to insecticide resistance in insects, highlighting why a potent resistance mutation is effective in some species but not others. We show that the mutations success is contingent on the enzymes pre-existing structural features, highlighting the strong intramolecular epistasis. Using laboratory evolution, we enhanced the enzymes detoxification activity over 1000-fold, yet discovered this did not translate to increased resistance in transgenic flies. This surprising result demonstrates that effective real-world resistance requires a delicate balance between an enzymes ability to bind an insecticide (affinity) and its speed at breaking it down (turnover), providing crucial insights into the constraints governing molecular adaptation.

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Frkic, R., Giang, A., Liu, J.-W., Esmaeily, M., Carr, P. D., Fraser, N. J., Hopkins, D., Oakeshott, J. G., Batterham, P., Mabbitt, P. D., Jackson, C. J.. 2025-07-07. Structural and Evolutionary Constraints of Organophosphate Resistance in Dipteran Carboxylesterases. https://doi.org/10.1101/2025.07.07.663592

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