Phytoene synthase modulates seed longevity via the action of β-carotene derived metabolites

Hazra, A.; Rao, S.; Zhou, X.; Christel, M. J.; Wrightstone, E.; Yang, Y.; Fish, T.; Thannhauser, T.; Liu, J.; Mazourek, M.; Li, L.

doi:10.1101/2025.06.05.658166

bioRxiv · 10.1101/2025.06.05.658166

Phytoene synthase modulates seed longevity via the action of β-carotene derived metabolites

Hazra, A.·Rao, S.·Zhou, X.·Christel, M. J.·Wrightstone, E.·Yang, Y.·Fish, T.·Thannhauser, T.·Liu, J.·Mazourek, M.·Li, L.

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Abstract

Seed longevity, the seeds ability to stay viable over time, is an important trait in agriculture. Despite extensive research, seed longevity remains one of the fundamental topics in plant biology. Here, we discovered the novel role of carotenoid metabolites in prolonging seed lifespan. We found that phytoene synthase (PSY), the gene encoding a major rate-limiting enzyme in carotenoid biosynthesis, modulated seed storability in Arabidopsis under both natural and artificial aging conditions. Seeds from the PSY overexpression (OE) lines exhibited significantly enhanced lifespan with low levels of reactive oxygen species (ROS), a major factor affecting longevity, whereas those from the psy mutants had decreased viability with high ROS levels. While lutein and {beta}-carotene were detected in seeds, only {beta}-carotene and its derived apocarotenoids, i.e. {beta}-cyclocitral and {beta}-ionone, were found to improve seed lifespan. Notably, the carotenoid cleavage dioxygenase 1 and 4 (ccd1 ccd4) double mutant and PSY ccd1 ccd4 seeds showed significantly reduced seed longevity, indicating that {beta}-carotene cleavage is necessary for or it is apocarotenoids playing the role in preserving seed lifespan. Comparative proteomic analysis identified TIP2;2, an aquaporin protein, which showed differential abundances in seeds of PSY OE and psy mutant vs wild type. The mutant tip2;2 had reduced seed longevity, and its promoter was transactivated by apocarotenoids. Collectively, this study uncovers a novel role of apocarotenoids in protecting seed longevity and highlights the importance of seed carotenoid production in strengthening agriculture. One Sentence SummaryPhytoene synthase, the gene encoding a major rate-limiting enzyme in carotenoid biosynthesis, modulates seed longevity via {beta}-carotene derived apocarotenoids and an aquaporin protein TIP2;2 identified is a new player that responds to apocarotenoid signaling and influences seed longevity.

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Hazra, A., Rao, S., Zhou, X., Christel, M. J., Wrightstone, E., Yang, Y., Fish, T., Thannhauser, T., Liu, J., Mazourek, M., Li, L.. 2025-06-09. Phytoene synthase modulates seed longevity via the action of β-carotene derived metabolites. https://doi.org/10.1101/2025.06.05.658166

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