Identification of new KCNT1-epilepsy drugs by in silico, cell and Drosophila modelling.

Ricos, M. G.; Cole, B. A.; Hussain, R.; Rychkov, G. G.; Shaukat, Z.; Pilati, N.; Muench, S. P.; Simmons, K. J.; Dibbens, L. M.; Lippiat, J. D.

doi:10.1101/2025.05.22.655336

bioRxiv · 10.1101/2025.05.22.655336

Identification of new KCNT1-epilepsy drugs by in silico, cell and Drosophila modelling.

Ricos, M. G.·Cole, B. A.·Hussain, R.·Rychkov, G. G.·Shaukat, Z.·Pilati, N.·Muench, S. P.·Simmons, K. J.·Dibbens, L. M.·Lippiat, J. D.

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Abstract

ObjectiveHyperactive KCNT1 potassium channels, caused by gain-of-function mutations, are associated with a range of epilepsy disorders. Patients typically experience drug-resistant seizures and in cases with infantile onset, developmental regression can follow. KCNT1-related disorders include epilepsy of infancy with migrating focal seizures and sleep related hypermotor epilepsy. There are currently no effective treatments for KCNT1-epilepsies, but suppressing over-active channels poses a potential strategy. MethodsUsing KCNT1 channel structural data, we in silico screened a library of known drugs for those predicted to block the channel pore to reduce the current amplitude and inhibit channel activity. ResultsEight known drugs were investigated in vitro for their effects on patient-specific mutant KCNT1 channels, with four drugs showing significant reduction of K+ current amplitudes. The action of the four drugs was then analyzed in vivo and two were found to reduce the seizure phenotype in humanized Drosophila KCNT1-epilepsy models. InterpretationThis study identified two known drugs, antrafenine and nelfinavir mesylate, that reduce KCNT1 channel activity and reduce seizure activity in whole animals, suggesting their potential use as new treatments for KCNT1-epilepsy. The sequential in silico, in vitro and in vivo mechanism-based drug selection strategy used here may have broader application for other human disorders where a disease mechanism has been identified.

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Ricos, M. G., Cole, B. A., Hussain, R., Rychkov, G. G., Shaukat, Z., Pilati, N., Muench, S. P., Simmons, K. J., Dibbens, L. M., Lippiat, J. D.. 2025-05-27. Identification of new KCNT1-epilepsy drugs by in silico, cell and Drosophila modelling.. https://doi.org/10.1101/2025.05.22.655336

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