Leveraging the subgenus category to address genus over-splitting exemplified with Prescottella and other recently proposed Mycobacteriales genera.

Val-Calvo, J.; Scortti, M.; Vazquez-Boland, J. A.

doi:10.1101/2025.04.27.650868

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bioRxiv · 10.1101/2025.04.27.650868

Leveraging the subgenus category to address genus over-splitting exemplified with Prescottella and other recently proposed Mycobacteriales genera.

Val-Calvo, J.·Scortti, M.·Vazquez-Boland, J. A.

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Abstract

Three related circumstances are compromising the stability of prokaryotic taxonomy and nomenclature, with a significant impact in the field of pathogenic microorganisms: (i) the growing trend of subdividing existing genera by arbitrary phylogenomics-based demarcations, creating an increasing number of new genera; (ii) the priority of databases towards the last validly published names; and (iii) the irreversibility of new names in databases even if changes in taxonomic opinion support reverting to previous classifications. Given the understandable end-user reluctance to name changes affecting well-known pathogens, parallel nomenclatures coexist, creating confusion. Here, we address this problem by exploiting the subgenus category to form new combinations that can be adopted by databases as per their latest validly published name priority policy. The proposed approach consists in lowering to subgenus rank the new genera arising from genus splits considered to be unwarranted. According to the Prokaryotic Code, the species in question would be designated with their previous generic synonym and, in parentheses, the subgenus name (which would correspond to the latest synonym used by the databases). Being the subgenus an optional taxonomic category, it can be omitted, but its use may facilitate the mapping of the synonyms in databases and the literature. For illustration, we apply the strategy to recent genus splits in the Mycobacteriales, specifically the new nested genus Prescottella within the rhodococcal radiation and the several new genera into which Mycobacterium was subdivided.

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Val-Calvo, J., Scortti, M., Vazquez-Boland, J. A.. 2025-04-27. Leveraging the subgenus category to address genus over-splitting exemplified with Prescottella and other recently proposed Mycobacteriales genera.. https://doi.org/10.1101/2025.04.27.650868

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