Efficient genetic code expansion tools enable in vivo study of lysine acetylation in non-model bacteria

Van Fossen, E. M.; Stephenson, M.; Frank, A.; Akella, S.; Wooldridge, R.; Wilson, A.; You, Y.; Nakayasu, E.; Egbert, R.; Elmore, J. R.

doi:10.1101/2025.04.14.648644

bioRxiv · 10.1101/2025.04.14.648644

Efficient genetic code expansion tools enable in vivo study of lysine acetylation in non-model bacteria

Van Fossen, E. M.·Stephenson, M.·Frank, A.·Akella, S.·Wooldridge, R.·Wilson, A.·You, Y.·Nakayasu, E.·Egbert, R.·Elmore, J. R.

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Abstract

Recent proteomic advancements have revealed widespread N{varepsilon}-lysine acetylation in pathways governing pathogenicity, metabolism, and antibiotic resistance in bacteria. The spontaneous, non-specific nature of this modification in prokaryotes obscures its biological role, necessitating prokaryotic specific in vivo interrogation systems. Genetic Code Expansion (GCE) offers a powerful method to investigate the roles and regulation dynamics of acetyl-lysine in vivo with the precise incorporation of a suite of non-canonical amino acids, including acetyl-lysine analogs. However, its use has been largely restricted to E. coli strains due to challenges associated with implementation and optimization of the technology in more diverse bacterial strains. Here, we present a bacterial host-agnostic, readily optimizable GCE platform designed to site-specifically incorporate non-canonical amino acids into target proteins within living bacteria. We further demonstrate the versatility of this technology by showcasing, for the first time, the successful incorporation of acetyl-lysine in a non-E. coli bacterium.

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Van Fossen, E. M., Stephenson, M., Frank, A., Akella, S., Wooldridge, R., Wilson, A., You, Y., Nakayasu, E., Egbert, R., Elmore, J. R.. 2025-04-14. Efficient genetic code expansion tools enable in vivo study of lysine acetylation in non-model bacteria. https://doi.org/10.1101/2025.04.14.648644

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