FAIRification of computational models in biology

Balaur, I.; Nickerson, D. P.; Welter, D.; Wodke, J. A. H.; Ancien, F.; Gebhardt, T.; Groues, V.; Hermjakob, H.; Konig, M.; Radde, N.; Rougny, A.; Schneider, R.; Malik Sheriff, R. S.; Shiferaw, K. B.; Stefan, M.; Satagopam, V. P.; Waltemath, D.

doi:10.1101/2025.03.21.644517

bioRxiv · 10.1101/2025.03.21.644517

FAIRification of computational models in biology

Balaur, I.·Nickerson, D. P.·Welter, D.·Wodke, J. A. H.·Ancien, F.·Gebhardt, T.·Groues, V.·Hermjakob, H.·Konig, M.·Radde, N.·Rougny, A.·Schneider, R.·Malik Sheriff, R. S.·Shiferaw, K. B.·Stefan, M.·Satagopam, V. P.·Waltemath, D.

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Abstract

Computational models are essential for studying complex systems which, particularly in clinical settings, need to be quality-approved and transparent. To enhance the communication of a models features and capabilities, we propose an adaptation of the Findability, Accessibility, Interoperability and Reusability (FAIR) indicators published by the Research Data Alliance to assess models encoded in domain-specific standards, such as those established by COMBINE. The assessments guide FAIRification and add value to models.

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Balaur, I., Nickerson, D. P., Welter, D., Wodke, J. A. H., Ancien, F., Gebhardt, T., Groues, V., Hermjakob, H., Konig, M., Radde, N., Rougny, A., Schneider, R., Malik Sheriff, R. S., Shiferaw, K. B., Stefan, M., Satagopam, V. P., Waltemath, D.. 2025-03-24. FAIRification of computational models in biology. https://doi.org/10.1101/2025.03.21.644517

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