The stress response factor SigH mediates intrinsic resistance to multiple antibiotics in Mycobacterium abscessus

Alam, M. S.; Khatun, M. S.; Yusuf, B.; Li, L.; Belachew, A. M.; Tadesse, H. A.; Zhang, J.; Tian, X.; Fang, C.; Gao, Y.; Liu, Z.; Hameed, H. M. A.; Hu, J.; Chen, X.; Zhong, N.; Wang, S.; Zhang, T.

doi:10.1101/2025.03.04.641476

bioRxiv · 10.1101/2025.03.04.641476

The stress response factor SigH mediates intrinsic resistance to multiple antibiotics in Mycobacterium abscessus

Alam, M. S.·Khatun, M. S.·Yusuf, B.·Li, L.·Belachew, A. M.·Tadesse, H. A.·Zhang, J.·Tian, X.·Fang, C.·Gao, Y.·Liu, Z.·Hameed, H. M. A.·Hu, J.·Chen, X.·Zhong, N.·Wang, S.·Zhang, T.

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Abstract

Mycobacterium abscessus (Mab) causes pulmonary diseases with limited treatment options due to its high level of intrinsic resistance to available drugs. Mab possesses complex and poorly understood drug resistance mechanisms. Identifying new drug targets and gaining a deeper understanding of drug resistance mechanisms are essential for discovering novel therapeutic alternatives. Here, we investigated the role of a putative sigma factor SigH in intrinsic multi-drug resistance in Mab. Mab SigH shares an 84% peptide sequence identity with Mycobacterium tuberculosis (Mtb) SigH, a well-known stress response protein and global transcriptional regulator. We constructed a sigH gene deletion strain of Mab ({Delta}sigH) and complemented strains by expressing either Mab sigH (CPMabsigH) or Mtb sigH (CPMtbsigH) in {Delta}sigH. The {Delta}sigH strain exhibited hypersensitivity to a broad range of antibiotics, including levofloxacin, moxifloxacin, tigecycline, tetracycline, amikacin, vancomycin, and rifabutin and all complemented strains restored the drug resistance phenotype. Additionally, {Delta}sigH showed increased sensitivity to oxidative and heat stress compared to the wild-type Mab and complemented strains. Transcriptomic analysis revealed that deletion of sigH disrupted the balance of gene expression, primarily elevating the expression of genes encoding YrbE and MCE family proteins and downregulating genes expressing ABC-type transporters, sigma and anti-sigma factors and other genes associated with antimicrobial resistance. Collectively, our findings indicate that SigH is a key regulator of global gene expression in response to environmental stresses, including antimicrobial treatment, and is crucial for the intrinsic drug resistance of Mab. SigH represents a promising target for the development of novel therapeutic strategies against Mab infections.

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Alam, M. S., Khatun, M. S., Yusuf, B., Li, L., Belachew, A. M., Tadesse, H. A., Zhang, J., Tian, X., Fang, C., Gao, Y., Liu, Z., Hameed, H. M. A., Hu, J., Chen, X., Zhong, N., Wang, S., Zhang, T.. 2025-03-10. The stress response factor SigH mediates intrinsic resistance to multiple antibiotics in Mycobacterium abscessus. https://doi.org/10.1101/2025.03.04.641476

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