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bioRxiv · 10.1101/2025.03.03.640886

Characterization of transcriptomic changes in the neurovascular unit of Alzheimiers transgenic mouse models using digital spatial profiling

Kalari, K. R.·Kandimalla, K. K.·Thompson, K.
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Abstract

Alzheimers disease (AD) affects 40 million individuals globally and is characterized by the accumulation of amyloid-beta (A{beta}) proteins, which aggregate and form plaques. BBB dysfunction drives AD cerebrovascular pathology and BBB integrity is maintained by neurovascular unit (NVU). Specifically, within the NVU, the cerebral endothelial cells maintain vascular homeostasis. In this study, we isolated endothelial-enriched regions of interest (ROIs) using the Nanostring GeoMx digital spatial profiler and employed a deconvolution model to evaluate transcriptomic changes. We observed dysregulation of cellular signaling potentially disrupting the APP+ BBB integrity. Analysis of ligand-receptor pairings that are the foundation of the NVU intercellular signaling indicated that the endothelial vasculature completes a feedback loop with the NVU to the regulating astroctyes. Further, we identified potentially antagonistic signaling roles for opioid receptor species that should be further investigated for potential therapeutic targets. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=159 HEIGHT=200 SRC="FIGDIR/small/640886v2_ufig1.gif" ALT="Figure 1"> View larger version (52K): org.highwire.dtl.DTLVardef@d89b56org.highwire.dtl.DTLVardef@be2d96org.highwire.dtl.DTLVardef@1a2e7bforg.highwire.dtl.DTLVardef@1cdc9f_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Kalari, K. R., Kandimalla, K. K., Thompson, K.. 2025-03-10. Characterization of transcriptomic changes in the neurovascular unit of Alzheimiers transgenic mouse models using digital spatial profiling. https://doi.org/10.1101/2025.03.03.640886

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