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bioRxiv · 10.1101/2025.01.24.634715

Plastoquinone redox status influences carboxysome integrity via a RpaA- and ROS-dependent regulatory network

Santos-Merino, M.·Nikkanen, L.·Kokarakis, E. J.·Allahverdiyeva, Y.·Ducat, D. C.
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Abstract

Carboxysomes are bacterial microcompartments that encapsulate Rubisco and are a core component of the cyanobacterial carbon concentration mechanism (CCM). While carboxysome number, size and spatial organization are observed to vary in different environmental conditions (CO2, light, temperature, light quality), molecular mechanisms underlying this potentially adaptive process remain elusive. Herein, we observed that mutants of the circadian rhythm/metabolism factor, Regulator of Phycobilisome Associated A (RpaA), exhibit a striking breakdown of carboxysomes under certain environmental conditions. We find that growth conditions leading to overreduction of the plastoquinone (PQ) pool (mixotrophic growth, high irradiance, or chemical inhibition of electron transfer from PQ to the cytochrome b6f complex) are accompanied by elevated generation of reactive oxygen species (ROS), and correlate with carboxysome breakdown. Carboxysome breakdown is reversed by environmental conditions or chemical inhibitors that prevent PQ overreduction and accompanying ROS generation. Taken together, our data supports a novel link between the redox status of the PQ pool and carboxysome status and/or integrity. Our results have implications for fundamental understanding of cyanobacterial energy balancing pathways and may indicate new research directions for understanding how the carboxysome is remodeled in response to changing environments.

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Santos-Merino, M., Nikkanen, L., Kokarakis, E. J., Allahverdiyeva, Y., Ducat, D. C.. 2025-01-24. Plastoquinone redox status influences carboxysome integrity via a RpaA- and ROS-dependent regulatory network. https://doi.org/10.1101/2025.01.24.634715

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