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bioRxiv · 10.1101/2025.01.22.633611

Molecular Insights into Fungal Innate Immunity Using the Neurospora crassa - Pseudomonas syringae Model

Stark, F. G.·Torii-Karch, M.·Yuvaraj, S.·Bonometti, L.·Gladieux, P.·Glass, L.·Krasileva, K.
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Abstract

Recent comparative genomics and mechanistic analyses support the existence of a fungal immune system. Fungi encode genes with features similar to non-self recognition systems in plants, animals, and bacteria. However, limited functional or mechanistic evidence exists for the surveillance-system recognition of heterologous microbes in fungi. We found that Neurospora species coexist with Pseudomonas in their natural environment. We leveraged two model organisms, Neurospora crassa and Pseudomonas syringae DC3000 (PSTDC3000) to observe immediate fungal responses to bacteria. PSTDC3000 preferentially surrounds N. crassa cells on a solid surface, causing environmental dependent growth responses, bacterial proliferation and varying fungal fitness. Specifically, the Type III secretion system (T3SS) {Delta}hrcC mutant of PSTDC3000 colonized N. crassa hyphae less well. To dissect initial cellular signaling events within the population of germinated asexual spores (germlings), we performed transcriptomics on N. crassa after PSTDC3000 inoculation. Upon contact with live bacteria, a subpopulation of fungal germlings initiate a response as early as ten minutes post-contact revealing transcriptional differentiation of Reactive Oxygen Species (ROS) mechanisms, trace metal warfare, cell wall remodeling dynamics, multidrug-efflux transporters, secondary metabolite synthesis, and excretion. We dissected mutants of plausible receptors, signaling pathways, and responses that N. crassa uses to detect and mount a defense against PSTDC3000 and found seven genes that influence resistant and susceptibility phenotypes of N. crassa to bacterial colonization. Mutants in genes encoding a ctr copper transporter (tcu-1), ferric reductase (fer-1), superoxide reductase (sod-2), multidrug resistance transporter (mdr-6), a secreted lysozyme-Glycoside hydrolase (lyz) and the Woronin body tether leashin (NCU02793, lah-1 and lah-2) showed a significant reduction of growth in the presence of bacteria, allowing the bacteria to fully take over the fungal mycelium faster than wildtype. In this study we provide a bacterial-fungal model system within Dikarya that allows us to begin to dissect signaling pathways of the putative fungal immune system.

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Stark, F. G., Torii-Karch, M., Yuvaraj, S., Bonometti, L., Gladieux, P., Glass, L., Krasileva, K.. 2025-01-24. Molecular Insights into Fungal Innate Immunity Using the Neurospora crassa - Pseudomonas syringae Model. https://doi.org/10.1101/2025.01.22.633611

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