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bioRxiv · 10.1101/2024.12.04.626907

Lineage labeling with zebrafish hand2 Cre and CreERT2 recombinase CRISPR knock-ins

Ming, Z.·Liu, F.·Moran, H. R.·Lalonde, R. L.·Adams, M.·Restrepo, N. K.·Joshi, P.·Ekker, S. C.·Clark, K. J.·Friedberg, I.·Yin, C.·Sumanas, S.·Mosimann, C.·Essner, J. J.·McGrail, M.
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Abstract

BackgroundThe ability to generate endogenous Cre recombinase drivers using CRISPR- Cas9 knock-in technology allows lineage tracing, cell type specific gene studies, and in vivo validation of inferred developmental trajectories from phenotypic and gene expression analyses. This report describes endogenous zebrafish hand2 Cre and CreERT2 drivers generated with GeneWeld CRISPR-Cas9 precision targeted integration. Resultshand2-2A-cre and hand2-2A-creERT2 knock-ins crossed with ubiquitous loxP-based Switch reporters led to broad labeling in expected mesodermal and neural crest-derived lineages in cardiac, pectoral fins, pharyngeal arch, liver, intestine, and mesothelial tissues, as well as enteric neurons. Novel patterns of hand2 lineage tracing appeared in venous blood vessels. CreERT2 induction at 24 hours reveals late emerging hand2 progenitors in the 24 - 48 hour embryo contribute to the venous and intestinal vasculature. Induction in 3 dpf larva restricts hand2 lineage labeling to mesoderm-derived components of the branchial arches, heart, liver and enteric neurons. Conclusionshand2 progenitors from the lateral plate mesoderm and ectoderm contribute to numerous lineages in the developing embryo. Later emerging hand2 progenitors become restricted to a subset of lineages in the larva. The hand2 Cre and CreERT2 drivers establish critical new tools to investigate hand2 lineages in zebrafish embryogenesis and larval organogenesis. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=117 SRC="FIGDIR/small/626907v1_ufig1.gif" ALT="Figure 1"> View larger version (20K): org.highwire.dtl.DTLVardef@12f58cborg.highwire.dtl.DTLVardef@16e95c8org.highwire.dtl.DTLVardef@12b8e9dorg.highwire.dtl.DTLVardef@a01848_HPS_FORMAT_FIGEXP M_FIG C_FIG Zebrafish hand2 Cre and CreERT2 drivers generated with GeneWeld CRISPR/Cas9 precision targeted integration label numerous lineages from the mesoderm and ectoderm. Temporal CreERT2 Tamoxifen regulated switching re{-} veals late emerging hand2 progenitors contribute to the embryonic venous vasculature and larval organs.

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Ming, Z., Liu, F., Moran, H. R., Lalonde, R. L., Adams, M., Restrepo, N. K., Joshi, P., Ekker, S. C., Clark, K. J., Friedberg, I., Yin, C., Sumanas, S., Mosimann, C., Essner, J. J., McGrail, M.. 2024-12-05. Lineage labeling with zebrafish hand2 Cre and CreERT2 recombinase CRISPR knock-ins. https://doi.org/10.1101/2024.12.04.626907

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