ERGA-BGE Reference Genome of the Striped Field Mouse (Apodemus agrarius), a Widespread and Abundant Species in Central and Eastern Europe

Janzekovic, F.; Buzan, E.; Boncina, A.; Escudero, N.; Fernandez, R.; Böhne, A.; Monteiro, R.; Aguilera, L.; Gut, M.; Camara Ferreira, F.; Cruz, F.; Gomez-Garrido, J.; Alioto, T. S.; Haggerty, L.; Martin, F.; De Panis, D.

doi:10.1101/2024.12.04.626796

bioRxiv · 10.1101/2024.12.04.626796

ERGA-BGE Reference Genome of the Striped Field Mouse (Apodemus agrarius), a Widespread and Abundant Species in Central and Eastern Europe

Janzekovic, F.·Buzan, E.·Boncina, A.·Escudero, N.·Fernandez, R.·Böhne, A.·Monteiro, R.·Aguilera, L.·Gut, M.·Camara Ferreira, F.·Cruz, F.·Gomez-Garrido, J.·Alioto, T. S.·Haggerty, L.·Martin, F.·De Panis, D.

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Abstract

The reference genome of Apodemus agrarius provides a valuable resource for phylogenetic studies of rodents, particularly mice, and for understanding factors that influence the geographical distribution of the species across East Asia and East Europe. A total of 25 contiguous chromosomal pseudomolecules were assembled from the genome sequence (23 autosomes and 2 sex chromosomes). This chromosome-level assembly encompasses 2.6 Gb, composed of 242 contigs and 60 scaffolds, with contig and scaffold N50 values of 35 Mb and 119 Mb, respectively.

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Janzekovic, F., Buzan, E., Boncina, A., Escudero, N., Fernandez, R., Böhne, A., Monteiro, R., Aguilera, L., Gut, M., Camara Ferreira, F., Cruz, F., Gomez-Garrido, J., Alioto, T. S., Haggerty, L., Martin, F., De Panis, D.. 2024-12-07. ERGA-BGE Reference Genome of the Striped Field Mouse (Apodemus agrarius), a Widespread and Abundant Species in Central and Eastern Europe. https://doi.org/10.1101/2024.12.04.626796

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