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bioRxiv · 10.1101/2024.10.10.617580

A direct computational assessment of vinculin-actin unbinding kinetics reveals catch bonding behavior

Ccoa, W. J. P.·Mukadum, F.·Ramon, A.·Stirnemann, G.·Hocky, G. M.
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Abstract

Vinculin forms a catch bond with the cytoskeletal polymer actin, displaying an increased bond lifetime upon force application. Notably, this behavior depends on the direction of the applied force, which has significant implications for cellular mechanotransduction. In this study, we present a comprehensive molecular dynamics simulation study, employing enhanced sampling techniques to investigate the thermodynamic, kinetic, and mechanistic aspects of this phenomenon at physiologically relevant forces. We dissect a catch bond mechanism in which force shifts vinculin between either a weakly- or strongly-bound state. Our results demonstrate that models for these states have unbinding times consistent with those from single-molecule studies, and suggest that both have some intrinsic catch bonding behavior. We provide atomistic insight into this behavior, and show how a directional pulling force can promote the strong or weak state. Crucially, our strategy can be extended to capture the difficult-to-capture effects of small mechanical forces on biomolecular systems in general, and those involved in mechanotransduction more specifically.

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Ccoa, W. J. P., Mukadum, F., Ramon, A., Stirnemann, G., Hocky, G. M.. 2024-10-13. A direct computational assessment of vinculin-actin unbinding kinetics reveals catch bonding behavior. https://doi.org/10.1101/2024.10.10.617580

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