Expanding the toolkit for ploidy manipulation in Chlamydomonas reinhardtii

Van de Vloet, A.; Prost-Boxoen, L.; Bafort, Q.; Paing, Y. T.; Casteleyn, G.; Jomat, L.; Lemaire, S.; De Clerck, O.; Van de Peer, Y.

doi:10.1101/2024.10.01.616035

bioRxiv · 10.1101/2024.10.01.616035

Expanding the toolkit for ploidy manipulation in Chlamydomonas reinhardtii

Van de Vloet, A.·Prost-Boxoen, L.·Bafort, Q.·Paing, Y. T.·Casteleyn, G.·Jomat, L.·Lemaire, S.·De Clerck, O.·Van de Peer, Y.

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Abstract

SummaryO_LIWhole genome duplications, widely observed in plant lineages, have significant evolutionary and ecological impacts. Yet, our current understanding of the direct implications of ploidy shifts on short- and long-term plant evolution remains fragmentary, necessitating further investigations across multiple ploidy levels. C_LIO_LIChlamydomonas reinhardtii, a haploid green alga, is a valuable model organism with profound potential to study the impact of ploidy increase on the longer-term in a laboratory environment. This is partly due to the ability to successfully increase the ploidy level. C_LIO_LIWe developed a strategy to engineer ploidy in Chlamydomonas reinhardtii using a collection of non-interfering antibiotic selectable markers. This approach allows to induce higher ploidy levels in Chlamydomonas reinhardtii and is applicable to field isolates, which expands beyond specific auxotroph laboratory strains and broadens the genetic diversity of parental haploid strains that can be crossed. We implement flow cytometry for precise measurement of the genome size of strains of different ploidy. C_LIO_LIWe demonstrate the creation of diploids, triploids and tetraploids by engineering North American field isolates, broadening the application of synthetic biology principles in Chlamydomonas reinhardtii. C_LIO_LIOur study greatly facilitates the application of Chlamydomonas reinhardtii to study polyploidy, both in fundamental and applied settings. C_LI

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Van de Vloet, A., Prost-Boxoen, L., Bafort, Q., Paing, Y. T., Casteleyn, G., Jomat, L., Lemaire, S., De Clerck, O., Van de Peer, Y.. 2024-10-02. Expanding the toolkit for ploidy manipulation in Chlamydomonas reinhardtii. https://doi.org/10.1101/2024.10.01.616035

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