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bioRxiv · 10.1101/2024.09.21.614222

Investigating Potential Microbial Contributors to Enhanced Metabolite Production under Oxygen Perturbations: An Integrated Metagenomic and Metabolomic Approach

Zhou, X.·Manna, B.·Lyu, B.·Singhal, N.
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Abstract

The specific impacts of oxygen perturbation on microbial communities and their synthesis of metabolites remain unclear. We systematically explored how oxygen perturbations alter microbial growth, subsequently affecting the abundance of functional genes and promoting the synthesis of metabolites such as amino acids. Analysis of microbial community structure indicates dynamic stability under oxygen perturbations, with only a fraction of the microbial abundance being altered. By comparing the abundance of functional genes with metabolic features, we revealed how changes in the microbial community impact the overall system performance. Amino acid biosynthesis has an enhanced potential under conditions of oxygen perturbation. Through biological and statistical correlation analyses, we identified microbial species significantly correlated with the efficiency of target metabolic reactions under oxygen perturbations. Mycolicibacterium madagascariense, Mycolicibacterium fortuitum, and Burkholderia pseudomallei displayed strong associations with proline and tryptophan synthesis reactions. Moreover, the abundance of microbial genera including Labrys, Actinomyces, and Nitrosopumilus exhibited a highlysignificant positive correlation with metabolite abundance in enriched metabolic pathways under oxygen perturbations. These results suggest that microbial systems might achieve dynamic stability in community structure under oxygen perturbations, while exhibiting slightly differential metabolic potentials. Notably, enhanced efficiency in amino acid biosynthesis could help to assimilate more carbon and nitrogen resources in activated sludge during wastewater treatment. SYNOPSISWe provide an in-depth investigation into the impact of oxygen perturbations on microbial growth in activated sludge systems and the subsequent variations in the abundance of metabolic genes. Our research highlights the potential for subtle changes in amino acid biosynthesis and identifies key microbial species associated with synthesis efficiency. These insights into the dynamic stability and differentiated metabolic potentials of microbial communities during oxygen perturbations can inform the development of more effective resource recovery strategies.

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Zhou, X., Manna, B., Lyu, B., Singhal, N.. 2024-09-22. Investigating Potential Microbial Contributors to Enhanced Metabolite Production under Oxygen Perturbations: An Integrated Metagenomic and Metabolomic Approach. https://doi.org/10.1101/2024.09.21.614222

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