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bioRxiv · 10.1101/2024.09.19.613985

habtools: an R package to calculate 3D metrics for surfaces and objects

Schiettekatte, N. M.·Asbury, M.·Chen, G.-Y.·Dornelas, M.·Reichert, J.·Torres-Pulliza, D.·Zawada, K. J.·Madin, J. S.
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Abstract

O_LITechnological advances in three-dimensional imaging techniques have opened the door to advanced morphological analyses and habitat mapping for biologists and ecologists. C_LIO_LIAt the same time, the challenge of translating complex 3D data into meaningful metrics that can be used in conjunction with biological data currently hinders progress and accessibility. C_LIO_LIWe introduce habtools, an R package that provides R functions to efficiently calculate complexity and shape metrics from DEMs, 3D meshes and 2D shapes as well as some helper functions to facilitate workflow. C_LIO_LIWe expect the functionality of habtools to continue to expand as new metrics and faster methods become available, and welcome new contributions and ideas. C_LI

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Schiettekatte, N. M., Asbury, M., Chen, G.-Y., Dornelas, M., Reichert, J., Torres-Pulliza, D., Zawada, K. J., Madin, J. S.. 2024-09-24. habtools: an R package to calculate 3D metrics for surfaces and objects. https://doi.org/10.1101/2024.09.19.613985

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