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bioRxiv · 10.1101/2024.07.20.604438

Fine Tuning Genetic Circuits via Host Context and RBS Modulation

Chan, D. T. C.·Winter, L.·Bjerg, J.·Krsmanovic, S.·Baldwin, G. S.·Bernstein, H. C.
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Abstract

The choice of organism to host a genetic circuit - the chassis - is often defaulted to model organisms due to their amenability. The chassis-design space has therefore remained underexplored as an engineering variable. In this work, we explored the design space of a genetic toggle switch through variations in nine ribosome binding sites compositions and three host contexts, creating 27 circuit variants. Characterization of performance metrics in terms of toggle switch output and host growth dynamics unveils a spectrum of performance profiles from our circuit library. We find that changes in host-context causes large shifts in overall performance, while modulating ribosome binding sites leads to more incremental changes. We find that a combined ribosome binding site and host-context modulation approach can be used to fine tune the properties of a toggle switch according to user-defined specifications, such as towards greater signaling strength, inducer sensitivity or both. Other auxiliary properties, such as inducer tolerance, are also exclusively accessed through changes in host-context. We demonstrate here that exploration of the chassis-design space can offer significant value, reconceptualizing the chassis-organism as an important part in the synthetic biologists toolbox with important implications for the field of synthetic biology. GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=139 SRC="FIGDIR/small/604438v1_ufig1.gif" ALT="Figure 1"> View larger version (50K): org.highwire.dtl.DTLVardef@1ff45d0org.highwire.dtl.DTLVardef@4060d7org.highwire.dtl.DTLVardef@95d5d8org.highwire.dtl.DTLVardef@10a98d5_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Chan, D. T. C., Winter, L., Bjerg, J., Krsmanovic, S., Baldwin, G. S., Bernstein, H. C.. 2024-07-21. Fine Tuning Genetic Circuits via Host Context and RBS Modulation. https://doi.org/10.1101/2024.07.20.604438

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