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bioRxiv · 10.1101/2024.06.17.599469

Integration of Kinetic Data into Affinity-Driven Models for Improved T Cell-Antigen Specificity Prediction

Ghoreyshi, Z. S.·Teimouri, H.·Kolomeisky, A. T.·George, J. T.
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Abstract

T cell receptor (TCR) and peptide-major histocompatibility complex (pMHC) interactions that result in T cell activation are complex and have been distinguished by their equilibrium affinity and kinetic profiles. While prior affinity-based models can successfully predict meaningful TCR-pMHC interactions in many cases, they occasionally fail at identifying TCR-pMHC interactions with low binding affinity. This study analyzes TCR-pMHC systems for which empirical kinetic and affinity data exist and prior affinity-based predictions fail. We identify a criteria for TCR-pMHC systems with available kinetic information where the introduction of a correction factor improves energybased model predictions. This kinetic correction factor offers a means to refine existing models with additional data and offers molecular insights to help reconcile previously conflicting reports concerning the influence of TCR-pMHC binding kinetics and affinity on T cell activation.

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Ghoreyshi, Z. S., Teimouri, H., Kolomeisky, A. T., George, J. T.. 2024-06-22. Integration of Kinetic Data into Affinity-Driven Models for Improved T Cell-Antigen Specificity Prediction. https://doi.org/10.1101/2024.06.17.599469

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