Comprehensive characterization of the T cell receptor repertoire in bladder cancer

Kjaer, A.; Kristjansdottir, N.; Juul, R. I.; Nordentoft, I.; Birkenkamp-Demtroder, K.; Ahrenfeldt, J.; Strandgaard, T.; Radif, D.; Hodgson, D.; Abbosh, C.; Aerts, H. J.; Agerbaek, M.; Jensen, J. B.; Birkbak, N. J.; Dyrskjot, L.

doi:10.1101/2024.05.30.596555

bioRxiv · 10.1101/2024.05.30.596555

Comprehensive characterization of the T cell receptor repertoire in bladder cancer

Kjaer, A.·Kristjansdottir, N.·Juul, R. I.·Nordentoft, I.·Birkenkamp-Demtroder, K.·Ahrenfeldt, J.·Strandgaard, T.·Radif, D.·Hodgson, D.·Abbosh, C.·Aerts, H. J.·Agerbaek, M.·Jensen, J. B.·Birkbak, N. J.·Dyrskjot, L.

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Abstract

T cells are one of the primary effector cells in the endogenous defense against cancer, yet the clinical impact of their quantity, diversity, and dynamics remains underexplored. Here we investigated the clinical relevance of the T cell receptor (TCR) repertoire in patients with bladder cancer. In advanced-stage bladder cancer, low pre-treatment peripheral TCR diversity was associated with worse overall survival (p=0.024), particularly when it coincided with a low fraction of circulating T cells (p=0.00049). The low-diversity TCR repertoires were dominated by expanded clones that persisted throughout treatment and disproportionately targeted latent viral infections. Longitudinal analysis revealed a reduction in TCR diversity after treatment indicating an adverse effect on the immune system. In early-stage bladder cancer, we showed that immunotherapy had a stimulatory effect on TCR diversity in patients with good outcomes. Single-cell sequencing identified most expanded clones as cytotoxic T cells, while non-expanded clones were predominantly naive T cells. Overall, our findings suggest that TCR diversity is a promising new biomarker that may offer new avenues for tailored oncological treatment to enhance clinical outcomes for bladder cancer patients.

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Kjaer, A., Kristjansdottir, N., Juul, R. I., Nordentoft, I., Birkenkamp-Demtroder, K., Ahrenfeldt, J., Strandgaard, T., Radif, D., Hodgson, D., Abbosh, C., Aerts, H. J., Agerbaek, M., Jensen, J. B., Birkbak, N. J., Dyrskjot, L.. 2024-06-02. Comprehensive characterization of the T cell receptor repertoire in bladder cancer. https://doi.org/10.1101/2024.05.30.596555

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