GRanges: A Rust Library for Genomic Range Data

Buffalo, V.

doi:10.1101/2024.05.24.595786

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bioRxiv · 10.1101/2024.05.24.595786

GRanges: A Rust Library for Genomic Range Data

Buffalo, V.

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Abstract

MotivationThe Rust programming language is a fast, memory-safe language that is increasingly used in computational genomics and bioinformatics software development. However, it can have a steep learning curve, which can make writing specialized, high performance bioinformatics software difficult. ResultsGRanges is a Rust library that provides an easy-to-use and expressive way to load genomic range data into memory, compute and process overlapping ranges, and summarize data in a tidy way. The GRanges library outperforms established tools like plyranges and bedtools. AvailabilityThe GRanges library is available at https://github.com/vsbuffalo/granges and https://crates.io/crates/granges.

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Buffalo, V.. 2024-05-28. GRanges: A Rust Library for Genomic Range Data. https://doi.org/10.1101/2024.05.24.595786

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