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bioRxiv · 10.1101/2024.05.06.592817

Evaluating the feasibility of medium chain oleochemical synthesis using microbial chain elongation

Agena, E.·Gois, I.·Bowers, C. M.·Mahadevan, R.·Scarborough, M. J.·Lawson, C. E.
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Abstract

Chain elongating bacteria are a unique guild of strictly anaerobic bacteria that have garnered interest for sustainable chemical manufacturing from carbon-rich wet and gaseous waste streams. They produce C6-C8 medium-chain fatty acids which are valuable platform chemicals that can be used directly, or derivatized to service a wide range of chemical industries. However, the application of chain elongating bacteria for synthesizing products beyond C6-C8 medium-chain fatty acids has not been evaluated. In this study, we assess the feasibility of expanding the product spectrum of chain elongating bacteria to C9-C12 fatty acids, along with the synthesis of C6 fatty alcohols, dicarboxylic acids, diols, and methyl ketones. We propose several metabolic engineering strategies to accomplish these conversions in chain elongating bacteria and utilize constraint-based metabolic modelling to predict pathway stoichiometries, assess thermodynamic feasibility, and estimate ATP and product yields. We also evaluate how producing alternative products impacts the growth rate of chain elongating bacteria via resource allocation modelling, revealing a trade-off between product carbon length and class versus cell growth rate. Together, these results highlight the potential for using chain elongating bacteria as a platform for diverse oleochemical biomanufacturing and offer a starting point for guiding future metabolic engineering efforts aimed at expanding their product range. Graphical AbstractIn this work, the authors use constraint-based metabolic modelling and enzyme cost minimization to assess the feasibility of using metabolic engineering to expand the product spectrum of anaerobic chain elongating bacteria. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=98 SRC="FIGDIR/small/592817v1_ufig1.gif" ALT="Figure 1"> View larger version (10K): org.highwire.dtl.DTLVardef@725c90org.highwire.dtl.DTLVardef@1b2575org.highwire.dtl.DTLVardef@382c95org.highwire.dtl.DTLVardef@1f71ea0_HPS_FORMAT_FIGEXP M_FIG C_FIG One Sentence SummaryIn this work, the authors use constraint-based metabolic modelling and enzyme cost minimization to assess the feasibility of using metabolic engineering to expand the product spectrum of anaerobic chain elongating bacteria.

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Agena, E., Gois, I., Bowers, C. M., Mahadevan, R., Scarborough, M. J., Lawson, C. E.. 2024-05-10. Evaluating the feasibility of medium chain oleochemical synthesis using microbial chain elongation. https://doi.org/10.1101/2024.05.06.592817

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