Minimized Sample Consumption for Time-Resolved Serial Crystallography Applied to the Redox Cycle of Human NQO1

Doppler, D.; Grieco, A.; Koh, D.; Manna, A.; Ansari, A.; Alvarez, R.; Karpos, K.; Le, H.; Sonker, M.; Ketawala, G.; Mahmud, S.; Quereda Moraleda, I.; Pey, A. L.; Letrun, R.; Doerner, K.; Koliyadu, J. C. P.; de Wijn, R.; Bielecki, J.; Han, H.; Kim, C.; Koua, F.; Round, A.; Sarma, A.; Sato, T.; Schmidt, C.; Vakili, M.; Zabelskii, D.; Bean, R.; Mancuso, A. P.; Schulz, J.; Fromme, R.; Medina, M.; Grant, T. D.; Fromme, P.; Kirian, R. A.; Botha, S.; Martin Garcia, J. M.; Ros, A.

doi:10.1101/2024.04.29.591466

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bioRxiv · 10.1101/2024.04.29.591466

Minimized Sample Consumption for Time-Resolved Serial Crystallography Applied to the Redox Cycle of Human NQO1

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Abstract

Sample consumption for serial femtosecond crystallography (SFX) with X-ray free electron lasers (XFELs) remains a major limitation preventing broader use of this powerful technology in macromolecular crystallography. This drawback is exacerbated in the case of time-resolved (TR)-SFX experiments, where the amount of sample required per reaction time point is multiplied by the number of time points investigated. Thus, in order to reduce the limitation of sample consumption, here we demonstrate the implementation of segmented droplet generation in conjunction with a mix-and-inject approach for TR studies on NAD(P)H:quinone oxidoreductase 1 (NQO1). We present the design and application of mix-and-inject segmented droplet injectors for the Single Particles, Clusters, and Biomolecules & Serial Femtosecond Crystallography (SPB/SFX) instrument at the European XFEL (EuXFEL) with a synchronized droplet injection approach that allows liquid phase protein crystal injection. We carried out TR-crystallography experiments with this approach for a 305 ms and a 1190 ms time point in the reaction of NQO1 with its coenzyme NADH. With this successful TR-SFX approach, up to 97% of the sample has been conserved compared to continuous crystal suspension injection with a gas dynamic virtual nozzle. Furthermore, the obtained structural information for the reaction of NQO1 with NADH is an important part of the future elucidation of the reaction mechanism of this crucial therapeutic enzyme.

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Doppler, D., Grieco, A., Koh, D., Manna, A., Ansari, A., Alvarez, R., Karpos, K., Le, H., Sonker, M., Ketawala, G., Mahmud, S., Quereda Moraleda, I., Pey, A. L., Letrun, R., Doerner, K., Koliyadu, J. C. P., de Wijn, R., Bielecki, J., Han, H., Kim, C., Koua, F., Round, A., Sarma, A., Sato, T., Schmidt, C., Vakili, M., Zabelskii, D., Bean, R., Mancuso, A. P., Schulz, J., Fromme, R., Medina, M., Grant, T. D., Fromme, P., Kirian, R. A., Botha, S., Martin Garcia, J. M., Ros, A.. 2024-04-29. Minimized Sample Consumption for Time-Resolved Serial Crystallography Applied to the Redox Cycle of Human NQO1. https://doi.org/10.1101/2024.04.29.591466

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