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bioRxiv · 10.1101/2024.04.26.591377

First whole genome assembly of Vaccinium floribundum Kunth, an emblematic Andean species

Albuja-Quintana, M.·Pozo, G.·Gordillo-Romero, M.·Armijos, C. E.·Torres, M. d. L.
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Abstract

BackgroundVaccinium floribundum Kunth, known as "mortino," is an endemic shrub species of the Andean region adapted to harsh conditions in high-altitude ecosystems. It plays an important ecological role as a pioneer species in the aftermath of deforestation and human-induced fires within paramo ecosystems, emphasizing its conservation value. While previous studies have offered insights into the genetic diversity of mortino, comprehensive genomic studies are still missing to fully understand the unique adaptations of this species and its population status, highlighting the importance of generating a reference genome for this plant. ResultsONT and Illumina sequencing were used to establish a reference genome for this species. Three different de novo genome assemblies were generated and compared for quality, continuity and completeness. The Flye assembly was selected as the best and refined by filtering out short ONT reads, screening for contaminants and genome scaffolding. The final assembly has a genome size of 529 MB, containing 1,317 contigs and 97% complete BUSCOs, indicating a high level of integrity of the genome. Additionally, the LAI Index of 12.93, further categorizes this assembly as a reference genome. ConclusionsThe genome of V. floribundum reported in this study is the first reference genome generated for this species, providing a valuable tool for further studies. This high-quality genome, based on the quality and completeness parameters obtained, will not only help uncover the genetic mechanisms responsible for its unique traits and adaptations to high-altitude ecosystems, but will also contribute to conservation strategies for a species endemic to the Andes.

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Albuja-Quintana, M., Pozo, G., Gordillo-Romero, M., Armijos, C. E., Torres, M. d. L.. 2024-04-29. First whole genome assembly of Vaccinium floribundum Kunth, an emblematic Andean species. https://doi.org/10.1101/2024.04.26.591377

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