Crystal structure of a bacterial photoactivated adenylate cyclase determined at room temperature by serial femtosecond crystallography

Kapetanaki, S. M.; Coquelle, N.; von Stetten, D.; Byrdin, M.; Rios-Santacruz, R.; Bean, R.; Bielecki, J.; Boudjelida, M.; Fekete, Z.; Grime, G. W.; Han, H.; Hatton, C.; Kantamneni, S.; Kharitonov, K.; Kim, C.; Kloos, M.; Koua, F. H. M.; de Diego Martinez, I.; Melo, D.; Rane, L.; Round, A.; Round, E.; Sarma, A.; Schubert, R.; Schulz, J.; Sikorski, M.; Vakili, M.; Valerio, J.; Vitas, J.; de Wijn, R.; Wrona, A.; Zala, N.; Pearson, A.; Dorner, K.; Schiro, G.; Garman, E. F.; Lukacs, A.; Weik, M.

doi:10.1101/2024.04.21.590439

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bioRxiv · 10.1101/2024.04.21.590439

Crystal structure of a bacterial photoactivated adenylate cyclase determined at room temperature by serial femtosecond crystallography

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Abstract

OaPAC is a recently discovered blue-light using flavin adenosine dinucleotide (BLUF) photoactivated adenylate cyclase from the cyanobacterium Oscillatoria acuminata that uses adenosine triphosphate and translates the light signal into the production of cyclic adenosine monophosphate. Here, we report the crystal structures of the enzyme in the absence of its natural substrate determined from room temperature serial crystallography data collected at both an X-ray free electron laser and a synchrotron and we compare them with the cryo macromolecular crystallography structures obtained at a synchrotron by us and others. These results reveal slight differences in the structure of the enzyme due to data collection at different temperatures and X-ray sources. We further investigate the effect of the Y6 mutation in the blue-light using flavin adenosine dinucleotide domain, a mutation which results in a rearrangement of the hydrogen-bond network around the flavin and a notable rotation of the side-chain of the critical Q48 residue. These studies pave the way for ps - ms time-resolved serial crystallography experiments at X-ray free electron lasers and synchrotrons in order to determine the early structural intermediates and correlate them with the well-studied ps - ms spectroscopic intermediates. SynopsisStructures of the dark-adapted state of a photoactivated adenylate cyclase are determined from serial crystallography (SX) data collected at room temperature at an X-ray free electron laser (XFEL) and a synchrotron and are compared with cryo macromolecular crystallography (MX) synchrotron structures obtained by us and others. These structures of the wild-type enzyme in combination with the cryo MX synchrotron structure of a light-sensor domain mutant provide insight into the hydrogen bond network rearrangement upon blue-light illumination and pave the way for the determination of structural intermediates of the enzyme by time-resolved SX.

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Kapetanaki, S. M., Coquelle, N., von Stetten, D., Byrdin, M., Rios-Santacruz, R., Bean, R., Bielecki, J., Boudjelida, M., Fekete, Z., Grime, G. W., Han, H., Hatton, C., Kantamneni, S., Kharitonov, K., Kim, C., Kloos, M., Koua, F. H. M., de Diego Martinez, I., Melo, D., Rane, L., Round, A., Round, E., Sarma, A., Schubert, R., Schulz, J., Sikorski, M., Vakili, M., Valerio, J., Vitas, J., de Wijn, R., Wrona, A., Zala, N., Pearson, A., Dorner, K., Schiro, G., Garman, E. F., Lukacs, A., Weik, M.. 2024-04-26. Crystal structure of a bacterial photoactivated adenylate cyclase determined at room temperature by serial femtosecond crystallography. https://doi.org/10.1101/2024.04.21.590439

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