bioRxiv Science⌕ Search

bioRxiv · 10.1101/2024.02.28.582469

Heat shock alters the distribution and in vivo interaction of major nuclear structural proteins, lamin and DNA topoisomerase II, with nucleic acids

Abstract

Lamins and topoisomerases play a critical role in the structural support of cell nuclei, in the regulation of chromatin structure, chromatin distribution, topology of DNA, gene expression, transcription, splicing and transport. Here, we report the role of lamins and Top2 during transition from normal conditions (N), in heat shock (HS) and recovery (R) in Drosophila since the fly genome contains a single gene for B-type lamin (lamin Dm), for A-type lamin (lamin C) and Top2. Heat shock increases transient phosphorylation of lamin Dm on S25, induces changes in solubility of lamin Dm, Top2, HSF, HDAC1 and HP1 proteins, especially in S2 cells and relocates Top2 and chromatin closer to the nuclear lamina with induction of granular staining for Top2 in Kc, S2 and embryonic cells. Lamin Dm interacts with Top2 protein and HS increases the interaction. In vivo photocrosslinking and immunoprecipitation revealed a significant increase in binding to chromatin and nucleic acids upon HS induction for Top2 and lamin Dm. All the detected changes in the properties and location of proteins returned to "normal" after recovery from heat shock. This suggests an important role for lamin Dm, Top2 and their complexes in nuclear functions during HS and recovery. We propose a model in which relocation of Top2 chromatin complexes closer to the nuclear lamina and lamin Dm may help to rearrange the gene expression pattern by tethering HS inactivated genes to nuclear lamina and NPCs which might also help to bind nuclear fraction of non-HS-related transcripts at the nuclear lamina/NPCs area.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Rowinska, M., Tomczak, A., Jablonska, J., Machowska, M., Piekarowicz, K., Rzepecki, R.. 2024-02-29. Heat shock alters the distribution and in vivo interaction of major nuclear structural proteins, lamin and DNA topoisomerase II, with nucleic acids. https://doi.org/10.1101/2024.02.28.582469

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Nucleosome Core Allostery Governs Chromatin Recognition and Cell Fate

Nucleosomes regulate chromatin folding, accessibility, and factor recruitment. Current models primarily attribute these functions to histone tail modifications, while the core is largely viewed as a structural scaffold. Yet subtle changes within the nucleosome core can produce profound functional consequences, and the mechanisms underlying these effects remain unclear. Here, we describe nucleosome core allostery as a fundamental principle of chromatin regulation that amplifies the impact of minimal nucleosome variations. Leveraging natural differences between H2A.Z variants, we show that the nucleosome core encodes distinct conformational dynamics that propagate allosterically, thereby controlling nucleosome accessibility and recognition by chromatin factors. As a result, a single buried amino acid substitution alone is sufficient to reprogram nucleosome dynamics and bias cell identity. Our findings establish the nucleosome core as an allosteric regulatory module and provide a generalizable framework for how subtle variation within nucleosomes is amplified into diverse biological outcomes in development and disease.

cell biology↗

SOX4 Reprograms Adipose Stromal Cells into a Cancer-Associated Fibroblast-like State to Drive Metabolic Disease

Pathogenic adipose tissue remodeling promotes metabolic disease in obesity, but the mechanisms that establish this unhealthy tissue state remain poorly understood. Here, we show that obesity drives SOX4-dependent reprogramming of mesenchymal stromal cells (MSCs) into cancer-associated fibroblast-like (CAF-like) cells that promote adipose tissue dysfunction. TGF{beta} signaling is elevated in obesity and activates SOX4 in mouse and human MSCs, inducing their conversion to a CAF-like state. In mice, MSC-specific SOX4 activation induces the CAF-like program and exacerbates adipose tissue inflammation and glucose intolerance, whereas Sox4 deletion attenuates inflammation and improves glucose homeostasis during obesity. We further identify the growth factor Midkine (MDK) as a SOX4-regulated paracrine effector produced by CAF-like cells. MDK inhibition in obese mice reduces adipose tissue inflammation and improves metabolic function. Together, these findings define a TGF{beta}-SOX4-MDK stromal signaling axis that drives pathological adipose tissue remodeling in obesity and highlight this pathway as a potential therapeutic target for improving metabolic health.

cell biology↗

PDLIM5 Modulates YAP1 Localisation and Fibrogenic Gene Expression in Hepatic Stellate Cells

Hepatic stellate cells (HSCs) are the key cellular drivers of liver fibrosis. During liver injury and chronic inflammation HSCs adopt an activated phenotype and secrete fibrotic extracellular matrix (ECM) components such as collagen 1. Mechanical cues derived from the fibrotic ECM drive and support the activation of HSCs, via mechanisms that involve integrins and the mechano-sensitive transcriptional regulator YAP1. It is not yet well understood how external mechanical cues are translated into a molecular response that alters YAP1 nuclear shuttling. There is evidence that suggests the PDZ and LIM domain protein (PDLIM) 5 can regulate YAP1 shuttling in human epithelial cells. We therefore investigated whether PDLIM5 is expressed in HSCs and contributes to YAP1 associated HSC mechano-activation. PDLIM5 protein was detected in HSCs in fibrotic human and mouse liver. PDLIM5 transcript and protein were expressed by primary human and mouse HSCs and by the immortalised HSC LX-2 cell line. PDLIM5 localised with actin stress fibres suggesting a role in HSC adhesion. Co-immunoprecipitation and proximity ligation in LX-2 cells support an association between PDLIM5 and YAP1. We used pharmacological (paclitaxel) and genetic (siRNA and CRISPRi) approaches to inhibit PDLIM5 in HSCs. Inhibiting PDLIM5 reduced YAP1 nuclear localisation and fibrotic gene (COL1A1, ACTA2) expression in LX-2 cells. Overall, these data support a role for PDLIM5 in regulating YAP1 localisation and fibrogenic gene expression in HSCs.

cell biology↗