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bioRxiv · 10.1101/2024.01.23.576789

Cross-omic Transcription Factors meta-analysis: an insight on TFs accessibility and expression correlation

Martini, L.·Bardini, R.·Savino, A.·Di Carlo, S.
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Abstract

It is well-known how sequencing technologies propelled cellular biology research in recent years, giving an incredible insight into the basic mechanisms of cells. Single-cell RNA sequencing is at the front in this field, with Single-cell ATAC sequencing supporting it and becoming more popular. In this regard, multi-modal technologies play a crucial role, allowing the possibility to perform the mentioned sequencing modalities simultaneously on the same cells. Yet, there still needs to be a clear and dedicated way to analyze this multi-modal data. One of the current methods is to calculate the Gene Activity Matrix (GAM), which summarizes the accessibility of the genes at the genomic level, to have a more direct link with the transcriptomic data. However, this concept is not well-defined, and it is unclear how various accessible regions impact the expression of the genes. Moreover, the transcription process is highly regulated by the Transcription Factors that binds to the different DNA regions. Therefore, this work presents a continuation of the meta-analysis of Genomic-Annotated Gene Activity Matrix (GAGAM) contributions, aiming to investigate the correlation between the TFs expression and motif information in the different functional genomic regions to understand the different Transcription Factors (TFs) dynamics involved in different cell types.

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Martini, L., Bardini, R., Savino, A., Di Carlo, S.. 2024-01-25. Cross-omic Transcription Factors meta-analysis: an insight on TFs accessibility and expression correlation. https://doi.org/10.1101/2024.01.23.576789

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